Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01296 ATGATGGCTTGTGGAAGTGTCAACCTTCCTCCTGGCTTTTGCTTCTCTCCAACGGATGAAGAACTTGTTCTTCATTTTCTTTATCCCAAGGCCTCTCTACCATGCCATCCCAACATCATTCCTGAGCTTGACCTCTCTCTGCATGATCCATGGGAGTTAAATGGTAAAGCGTTATCAAGTGGAAATCAACACTATTTCTTCACCAGAGTGAAGGAAAACAGATCCACAGAAAATGGGTATTGGAAGGAAATAGGAGTTACAGAGCCAATAGTATCTGCATCTGAAAAAGTGGGGATGAAGAAGTCCCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACCAGTTGGGTCATGCATGAGTATCATATCTGCTCATCCAGTTTTAGCACTGGATCTTGTGGAAGTACTCGCGGAAGAAGAAAATCAAATCAATGTAGGAGCAAATGGGTTTTGTGCAAAGCCTATGAAAAGAAAAGTTCTCAATCCCAACAAGGTGTAAGTTCTTACAGCGATGAGAATGACAGTGGAACTGAGCTTTCATGGCTAGACGAATTTTACATGTCGTTAGATGATGATCTTGAAGAAGTTATGAGCCATCCTAATTAG 612 0.4216 MMACGSVNLPPGFCFSPTDEELVLHFLYPKASLPCHPNIIPELDLSLHDPWELNGKALSSGNQHYFFTRVKENRSTENGYWKEIGVTEPIVSASEKVGMKKSLVFNLGEAPQGTETSWVMHEYHICSSSFSTGSCGSTRGRRKSNQCRSKWVLCKAYEKKSSQSQQGVSSYSDENDSGTELSWLDEFYMSLDDDLEEVMSHPN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01296 203 Pfam No apical meristem (NAM) protein 10 125 IPR003441 GO:0003677|GO:0006355
Spst3g01296 203 PANTHER NAC TRANSCRIPTION FACTOR 56 9 174 - -
Spst3g01296 203 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Spst3g01296 203 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Spst3g01296 203 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01296 Spst-Chr3 16374825 16375824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01296 2 163 NAC Transcription Factor Family AT1G61110 43.931 1.97e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g01296 NAM 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01296 - - gmx:100779578 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01296 3 16374825 16375824 Spst3g01296 3 16374825 16375824 ECH