Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01290 ATGGAAGATGAAAGCCATGGCACTTTGCCAAATGGATTCAACTCAGGAAGCCCCGAAAGCCCTTGCTTAAAGACCACCAACTCCAACTCCAACACCACCACCACCACCACCCCAACCACACACACCAACAACAACAACATCATCAATAACCATAATAACAACAACAACACTAACCACAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAATGTCGGAAGAATCATGAAAAAAGTTATCCCTTCCAATGGAAAAATCTCCAAGGATGCCAAGGAAACTGTCCAAGAGTGTGTCTCCGAGTTCATCAGCTTTGTCACCGGAGAAGCCTCCGACAAATGCCAAAGGGAGAAGAGAAAGACCATCAATGGAGACGATGTCATATGGGCCATCACAACCCTAGGCTTTGAGGACTACGTCGAACCCTTGAAAATTTACCTTCAGAAATACAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAACAAAGGCTACAACAACACCAGCAAAACAATACTAATAATAACAACAATAACAATAATAATAACATTAACAATAATAATGTTAATAACCAAGATGAGACTAATCAACAATTCAATGCTGCATATGCCTCACAAAATCTCATTTCTCAGCCTCCATATGTGGCCACTGATCAGAAGTTTTCACTTCCCTTCTCTCCAAACTCAATTCAGAATCACCAGATTGATTCAAAAAAGCAGCGGTTGAAGCTCTTCGTTCACTTCGAACTCAGATTCGTTTTGAATCTCTTCTCTCAGAAACGATGGTTGCATGTTATGGATGTGTCGCATGGTGTTTCAGAAACATGTATTGCTAAACTAATCGTCCGGTTTATCGTTTTAGAAAACTAG 882 0.407 MEDESHGTLPNGFNSGSPESPCLKTTNSNSNTTTTTTPTTHTNNNNIINNHNNNNNTNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNTNNNNNNNNNNINNNNVNNQDETNQQFNAAYASQNLISQPPYVATDQKFSLPFSPNSIQNHQIDSKKQRLKLFVHFELRFVLNLFSQKRWLHVMDVSHGVSETCIAKLIVRFIVLEN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01290 293 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 130 IPR003958 -
Spst3g01290 293 ProSitePatterns NF-YB/HAP3 subunit signature. 97 113 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst3g01290 293 MobiDBLite consensus disorder prediction 166 196 - -
Spst3g01290 293 Gene3D Histone, subunit A 54 203 IPR009072 GO:0046982
Spst3g01290 293 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 197 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst3g01290 293 PRINTS CCAAT-binding transcription factor subunit A signature 132 150 - -
Spst3g01290 293 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Spst3g01290 293 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Spst3g01290 293 MobiDBLite consensus disorder prediction 1 61 - -
Spst3g01290 293 FunFam Nuclear transcription factor Y subunit B-3 55 201 - -
Spst3g01290 293 MobiDBLite consensus disorder prediction 8 61 - -
Spst3g01290 293 SUPERFAMILY Histone-fold 63 191 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01290 Spst-Chr3 16321115 16324865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01290 61 235 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.407 5.23e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g01290 CBFD_NFYB_HMF 7.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01290 K08065 - gmx:100778216 319.701