Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01286 ATGGCGAACAAGAAGAGCTCCAAGAAACCAATGAGTCTCAATGACAGTCACTATCGCTTCCTCCAAGATCATTCCGCTCCCCCCAAACCCTCTTCCAAGCTTTTCGAGGAAGAATCGATCGAGCCCTCCACGCAAAAACAACAACACCAAAACATTCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAAACTCGGACGAGAAACATGAACCGATCAAGGTACATGAAGCAGAAGAAGAAAAAACCCTGTCCTACGATGTTTCTACAACTAGGGTAAACTCGGACGACAAACGCGAACCAATCATGTTTCAAGAAGAACACGAAGAGGAAGATTCAGTCGACGTAGTTAATTCTTCCTCTCGGCACAGGTCGGATGAGAAACACGAAACAATCATTTTTGAAGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTCCCCCTAAGGAAGTACGGAAGACGAAGGTGAAAGTACAGGGGCGCCGCCGCCTCTGCAAGGTCGTGCATGAAGATGCTGGAAAAAGCGTGGCGGATGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCGCCGATTCCGGCGCCTAAAATCGTTATCCAGATTGAGAAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGAATGAACTGAACTCCAAGTTTGAGTTGCTATCTGTTGAAAGGAAGCCGAGGCCGAAACGTGTAGAGGGTTTGGTTGGAGGTAAAGAAAGTTACGATGATGAGGATTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGCCTGAGGGTAATAAGAATGATGATGATGGCTGTATTGAGGATGATTCTGTTCAGGTGATGGATAATTTTGTGCCTGAGAACGATGGTTCAATAACTTTGACTGGCCCCAGATCAACTTATAAGTTGCCGGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGAAGTGGCTATGGTCTTTGCATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACCATGCAGATTTGTGGCTTTCTAGCTGGACTGTTCCATTCTCGTTTAATTAGAAGGGCATTGGTTGTAGCCCCTAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTGTCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTGCGGAACAATTCTAAGTCCTTACGGGGGAATAGTTATTTAGATGATGAGGAAGGTGAAGACGAGGCCACATGGGACTACATGATACTTGATGAGGGACACCTGATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCTTTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTCAAAGAAAATTTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGAGATCAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTGAACCTTACTTTTTAAGACGTATGAAGAGTGAGGTTTTCAGTCAAGATGATGAGAAAGCGACAACAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTCCGACTGACCAGTGTTCAGCGTTATCTTTATGAAGCGTTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGCGATCATCCACTTTTGTTGACCAAGCGAGCCGCGGAGGATGTGTTGGAAGGGATGGACTCGATGCTGAAGCCAGAAGAAGCTAATATTGCAACAAAATTGGCAATGCACATAGCTGATGTTGCAGACACAGATAAGTTTAAAGATGAACAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCGCAGAAGGGCACTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTACTATTCCGAGGCTATGACTTTTTACGAATTGATGGGACAACAAAAGCTAGTGATAGACTACAGATTGTTAATGATTTCCAAGAAGGTGCTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTCGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCATATCGAATTGGTCAAAAGAAAGATGTTATTGTATATAGACTGATGACTTGCGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAGAGGCAATTGAATGCGAAGCACGATCATCAATATACAGTTAATGAATCTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTATTTTCAAAGACAGCGCCGCCGGTTCGAGCTGAACTTGAGGATGATGAAGTCACAAGGAATCATGCCACTAAATATATTGGGACTTCAAGATCATCTTCAAATGACCATATTACTTATGGCGCCGAATTTGCATTTAATCCTAAGGATGTTACCAGAAGCAAAAAAGGTTCTTCTCCTAGCAGTTCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGTTATGATTTCTAAATTACCTGACAAGGGCGAGAAACTGCAGAAACGACTTGCGGAACTGAATTTAGTGCTGGCTGAGCTGAAAAGTGAAAGAAATGTGATTGATTTAGATGATTTTACCACTGAATTTCAACAGGTGTTGAATATGTAG 3081 0.4232 MANKKSSKKPMSLNDSHYRFLQDHSAPPKPSSKLFEEESIEPSTQKQQHQNIPQFSAITDFDSPIGLNSDEKHEPIKVHEAEEEKTLSYDVSTTRVNSDDKREPIMFQEEHEEEDSVDVVNSSSRHRSDEKHETIIFEEEEAPPDVVDFPPKEVRKTKVKVQGRRRLCKVVHEDAGKSVADDESKFDELIDLDSPIPAPKIVIQIEKSGGKNEIRDILNELNSKFELLSVERKPRPKRVEGLVGGKESYDDEDLEYGSAGSSFSPQQESLPEGNKNDDDGCIEDDSVQVMDNFVPENDGSITLTGPRSTYKLPAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNSYLDDEEGEDEATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKENFEKPILRGNDKHASDRDQRVGSSVAKELRDRIEPYFLRRMKSEVFSQDDEKATTKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANIATKLAMHIADVADTDKFKDEQDVSCKISFIMSLLDNLIAEGHCVLIFSQTRKMLNLIQECLLFRGYDFLRIDGTTKASDRLQIVNDFQEGAGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNAKHDHQYTVNESFKAHIEFLKSQGIAGVSHHSLLFSKTAPPVRAELEDDEVTRNHATKYIGTSRSSSNDHITYGAEFAFNPKDVTRSKKGSSPSSSGKLTESEIKDKINRLSQTLSNAVMISKLPDKGEKLQKRLAELNLVLAELKSERNVIDLDDFTTEFQQVLNM 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01286 1026 CDD SF2_C_SNF 669 800 - -
Spst3g01286 1026 Gene3D - 304 579 IPR038718 -
Spst3g01286 1026 MobiDBLite consensus disorder prediction 117 150 - -
Spst3g01286 1026 Pfam SNF2-related domain 323 627 IPR000330 GO:0005524|GO:0140658
Spst3g01286 1026 MobiDBLite consensus disorder prediction 1 150 - -
Spst3g01286 1026 FunFam Protein CHROMATIN REMODELING 24 299 577 - -
Spst3g01286 1026 Pfam Helicase conserved C-terminal domain 677 789 IPR001650 -
Spst3g01286 1026 Coils Coil 987 1007 - -
Spst3g01286 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 557 IPR027417 -
Spst3g01286 1026 MobiDBLite consensus disorder prediction 238 282 - -
Spst3g01286 1026 SMART helicmild6 706 789 IPR001650 -
Spst3g01286 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 849 IPR027417 -
Spst3g01286 1026 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 507 IPR014001 -
Spst3g01286 1026 MobiDBLite consensus disorder prediction 238 253 - -
Spst3g01286 1026 SMART ultradead3 315 518 IPR014001 -
Spst3g01286 1026 MobiDBLite consensus disorder prediction 66 109 - -
Spst3g01286 1026 Gene3D - 580 875 IPR027417 -
Spst3g01286 1026 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 839 IPR001650 -
Spst3g01286 1026 PANTHER SNF2/RAD54 FAMILY MEMBER 70 1004 - -
Spst3g01286 1026 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01286 Spst-Chr3 16286055 16294009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01286 320 843 RAD5 or RAD16-like Gene Family AT1G02670 25.305 1.11e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst3g01286 SNF2_N 8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01286 K20093 - gmx:100779283 1660.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01286 3 16286055 16294009 Spst3g01286 3 16286055 16294009 ECH