Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01276 ATGCAAGGAGAATTGGAATTACCACCCGGGTTTAGATTCCATCCCACTGATGATGAACTCGTGAACCACTACTTGTGCAGAAAGTGTGCTTCTCAGTCCATTGCTGCTCCCATCATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGATATGGCTCTTTATGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGTGACAGAAAATATCCAAACGGTTCACGACCGAACCGGGCGGCTGGAACCGGGTACTGGAAGGCGACCGGAGCGGATAAACCGATTGGGAAACCGAAAGTCCTTGGAATTAAGAAAGCCCTTGTGTTCTACGCTGGGAAAGCCCCAAAAGGAGTGAAGACCAATTGGATCATGCACGAATACCGCTTAGCCAACGTCGACAGATCTGCCTCCAAGAAAAACAACAATTTGAGGCTTGATGATTGGGTGCTATGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATAATGGCGTTGGGGTGGTGGATCAGAAATTGGCGAAATTACCAGAGGAGGTTTCCTTCCACCACGAGATCAAGCCTGAGATCAAGATGTACGACCACGACCATTTAAGGAGCAACCAACTGTACATGGACTCGTCGGATTCGGTGCCGAGGTTAAACACGGACTCTAGCTGCTCCGAGCAGGTGGTTTCGCCGGACGGCACGTGCGAGAGGGAGGTGCAGAGCGAGTGGAACAACCTCGGGTTGGGCCCGGACCTGGTTTCGGGCTTTGATTTTAATTTGATGGATCTGTCAGCAGACGACGCTTTTGCCCCTGAGGCCCAATACCAAATGAACCAGCCCTCACCCTGGCATGAGATGTTGGCTTACCTACCGAAGACATTTTAA 882 0.4921 MQGELELPPGFRFHPTDDELVNHYLCRKCASQSIAAPIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKVLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNNGVGVVDQKLAKLPEEVSFHHEIKPEIKMYDHDHLRSNQLYMDSSDSVPRLNTDSSCSEQVVSPDGTCEREVQSEWNNLGLGPDLVSGFDFNLMDLSADDAFAPEAQYQMNQPSPWHEMLAYLPKTF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01276 293 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Spst3g01276 293 PANTHER NAC TRANSCRIPTION FACTOR 56 7 208 - -
Spst3g01276 293 FunFam NAC transcription factor 16 162 - -
Spst3g01276 293 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Spst3g01276 293 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Spst3g01276 293 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01276 Spst-Chr3 16206812 16207911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01276 1 293 NAC Transcription Factor Family AT1G01720 61.462 1.94e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g01276 NAM 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01276 - - gmx:100170751 521.546