Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01273 ATGAAAGTGAAGGAAGATTTGAGAAATGCAACGAAAATGGCAACACACCGAAATCTTAATAAAAAAGTGTGTATATTGAGATGCGTGATGGTATTGATGTTTTGTGTGGAAAAGGCTACAAATGGAAAGGAGTGGGTACAGGAAATTGTTAATCTTATTGAAGTAGAAGGATGGTCTAATAATCTGAATGGTCAATTTGTGTATATGAGTCCGAAGACGGATCAGATGGGCAGAGGAAATGATTCAGCAATGGCGAAGGAAGAAGTCAGTGATGATGGTTCCTCGACTGTTGGGAATGGGGATTTAGAATCTCATGCTCGAATTAGTTTGGACAAGGAAGGCTTGGAAACATGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAGTTTTTAGGCATCACCCCAGGTTCAGAAATGTACAAAAGCAAGGGAGAAGTAGGGTGTGATGGCAGTGGAGTTCCCAGAAATTTGTCTCTTAATAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTTAGCCCTGATGGGGAGGTTTTCATTTGTAAAAGCGATTTAGAACTTGGTTTGTCTCATCAAGATAAACTAGTTGAACTTGGATGTTCTTGTAAAAACGATCTTGCTTTAGTCCATTATGCTTGTGCGCTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGACTTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGATGGATTGAGGGAAAGAACTGCTAGTGGTGATCCTGGTCCTGCACAAGCAAATGCAAATGCAAATGCTGGTGTTGATCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTTAGTGAGATTGCACTATGGTTTTGTCCTCATAATAACATTAGCAATAACAACATTAGCAATGTGGACACAGTTTCACAGGTTGCTTCTGAGCAGCATTTGAATATTATTGGTGAAGATGCTCCCCCTGCACAGAATAGTGCAACTAAATGGGCTGTTGAGGGTACAGGGATCCTGCTTGCTACTGGGCTGCTTACCATTACCCTTGCATGGCTTATAGCCCCCCGTGTTGGAAAGAAAACTGCTAGTAGTGGCCTTCATATCTTACTTGGAGGTGTTTGTGCTTTAGCAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAGGTATGGACCTGCACGTTATTGGGCAATCTTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1314 0.4186 MKVKEDLRNATKMATHRNLNKKVCILRCVMVLMFCVEKATNGKEWVQEIVNLIEVEGWSNNLNGQFVYMSPKTDQMGRGNDSAMAKEEVSDDGSSTVGNGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSEMYKSKGEVGCDGSGVPRNLSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRLSDFNKVVGALKEYDGLRERTASGDPGPAQANANANAGVDPDAVAAIRRQRLSEIALWFCPHNNISNNNISNVDTVSQVASEQHLNIIGEDAPPAQNSATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTASSGLHILLGGVCALAVVVFFRFFVLTRIRYGPARYWAILFVFWFLVFGIWASRTHGAHTT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01273 437 SMART ringv_2 187 237 IPR011016 GO:0008270
Spst3g01273 437 PANTHER ZINC FINGER, RING-CH-TYPE 79 404 - -
Spst3g01273 437 MobiDBLite consensus disorder prediction 74 101 - -
Spst3g01273 437 Pfam RING-variant domain 202 236 IPR011016 GO:0008270
Spst3g01273 437 SUPERFAMILY RING/U-box 200 239 - -
Spst3g01273 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 239 IPR013083 -
Spst3g01273 437 ProSiteProfiles Zinc finger RING-CH-type profile. 177 243 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01273 Spst-Chr3 16178770 16182677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01273 76 427 C3H Transcription Factor Family AT5G08750 64.365 1.06e-150 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01273 - - gmx:100805323 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01273 3 16178770 16182677 Spst3g01273 3 16178770 16182677 ECH