Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01257 ATGTCCAACACCTCCCACAAATTACAGGACTCGACCGGTGAGTTTTCCTTGGACATCAAAGAGGTTTATATGTTTCGCCCAAATTTTAGCAGGGCTCCTCTCAAAATATTGACGAGGTGGCTCGTATTCCTTACTATCTTGAAAGTCAGTTCAGCTATCAAAGACCCTGACGTAGAAGGTGAAGCTCTGCTTGATCTTTTACATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACAGTCATTTAGTTAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTCATATCACTGGCCCTAGCTTCCATTGGATTTTCTGGAACACTTTCTCCCTCAATTACCAAATTGAAATATTTGGTTAGCGTGGAATTGCAGAACAACAATCTTTCAGGACCCTTGCCTGATTACATTTCCAACTTGAAAGACCTGCAATATCTAAATCTTGCTGACAATAATTTTAATGGTTCTGTACCAGATAAATGGGGTGAATTATCCAATCTAAAGTATCTGGATCTTTCATCTAATGGTCTTACTGGAAGGATCCCAATGCAACTCTCTTCAGTTCCAATGTTTAACTATTCAAATACGCAACTTCAGTGTGGTCCTGGCTTCGAGCAGGCTTGCGCTTCTAAATCTGAAAGTCCAGATTCAACCCACAAATCAAAATTGACAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCATAGGCAAAAAAGGGAAGTCTTTGTTGATGTTTCAGGCGAAGACGAGAGCAAAATTTCCTTTGGGCAATTGCGAAGATTTTCTTGGCGTGAACTCCAACTTGCCACCAAAAATTTCAGTGAAGGGAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACCAAAGTCGCTGTGAAACGCCTCATTGATTATCACAACCCTGGTGGAGAGGCTGCATTCGAAAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGCGTAGCTTATCGACTGAGAGATTTAAAACCAGGTGAGAAGGCCTTGGACTGGCCAACAAGAAAACGTGTGGCTTTTGGTACGGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAAGCAGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGATTTTGGGCTAGCCAAGCTGGTGGATGCAAGGATTACTCATGTCACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACTGGAAAATCTTCAGAGAAGACTGATGTATTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTTATTGATTATGTCAAAAAGCTGCTGAGAGAAAAAAGGTTGGAGGACATCGTGGATAGAAATTTGAAGAGTTATGATCCAAAGGAAGTTGAGACCATTCTTCAGGTTGCATTGCTTTGCACCCAAGGCTACCCCGAGGATCGTCCAACCATGTCAGAAGTGGTAAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1857 0.4238 MSNTSHKLQDSTGEFSLDIKEVYMFRPNFSRAPLKILTRWLVFLTILKVSSAIKDPDVEGEALLDLLHFLNDSNKQITDWDSHLVSPCFSWSHVTCRNGHVISLALASIGFSGTLSPSITKLKYLVSVELQNNNLSGPLPDYISNLKDLQYLNLADNNFNGSVPDKWGELSNLKYLDLSSNGLTGRIPMQLSSVPMFNYSNTQLQCGPGFEQACASKSESPDSTHKSKLTKIVRYASCGAFALLCLGAILTYRHHQMHRQKREVFVDVSGEDESKISFGQLRRFSWRELQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKPGEKALDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARITHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLKSYDPKEVETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01257 618 Gene3D Ribonuclease Inhibitor 56 220 IPR032675 -
Spst3g01257 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Spst3g01257 618 Pfam Leucine rich repeat N-terminal domain 58 96 IPR013210 -
Spst3g01257 618 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 57 216 - -
Spst3g01257 618 Pfam Leucine rich repeat 125 183 IPR001611 GO:0005515
Spst3g01257 618 Pfam Protein kinase domain 297 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01257 618 SMART serkin_6 296 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01257 618 FunFam Somatic embryogenesis receptor kinase 1 265 372 - -
Spst3g01257 618 SUPERFAMILY L domain-like 60 197 - -
Spst3g01257 618 SUPERFAMILY Protein kinase-like (PK-like) 274 570 IPR011009 -
Spst3g01257 618 FunFam Somatic embryogenesis receptor-like kinase 1 373 589 - -
Spst3g01257 618 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Spst3g01257 618 Gene3D Transferase(Phosphotransferase) domain 1 373 588 - -
Spst3g01257 618 ProSiteProfiles Protein kinase domain profile. 296 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01257 618 Gene3D Phosphorylase Kinase; domain 1 265 372 - -
Spst3g01257 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 41 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01257 Spst-Chr3 16057790 16064359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01257 41 613 Receptor kinase-like Gene Family AT5G65240 56.053 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst3g01257 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01257 - - gmx:100800886 1117.45