Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01246 ATGCCTCTTTTAAGGAGAAAGCCTTTTGCGTTGGCCAAGCCCCCTGAGGAGTTGAAGCCAGACGAACTTGTCTACCAAATTCGATTTACGAAAGAAATCTTTCGAGATTATACTGATTATTTGAAGCGATTGAATCTATACCGCCAGAGGGTTTGGACGTGCAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACTGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTACTGCTTTAGGGATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGCAGTACATCCATGCAGAATATTAAAAGTAATTGAGAAAGGAGTTGACACATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGATCAAGGAGAACTCAGTGCAGAACATTTGGTGCATAAGAAGCCACTTTTTAGTAGGAATGTTTTGAAGTCTTTTATTCGGGAGTCTACATATCGGAATGCCCCTTGGGTTTTGCATGATGAACTAGCAAAAAATCATGGAATATCAACTGATATTCCTGAGGAATTAAGAAGAAGGGTTTTTTACAGAGATGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACGGGAAGATGCTGGTAATGGTAAAAGGAAAAAGTCGGATGGGGCACAAGTCGAGGATTCTTGCCAAGAGAAAGAAAATGTTCAACACAAGAATAAAGCTATCAAATACCCCATTGATGATCTATTGGTCAAGCCTAGTCCAGATGATCCTGTTTTCACTAATCGTCCTTCTCCATCAAAAGACTTCAATATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATATGCTCAATTCCTTTGGTAGACTGTTGCACCTGTTGCCCTACTCTCTGGAAGATTTTGAAAATGCAATCTGCCACAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTCCGACTTCTCATCAAAGATGATGATGAATATTCTTCAGCTTTGAAGAACCGAAAGCTGAAGTCTAAGATTACAATGATTAATTGGACAGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCAGAACTGCGGTGCCATGAAGCAACTATAAAGCGTGGACATTATGGCCTTGTAGATGTCAGTGCTAAATTAGAAATCTTGGGCGAATTGGTCAATCGAGCCCTTGAAACCACAATTTTCAGGGAAAAGTTAGAAGAGATTATTGAACAGCGGCAGGCACTTAGAAGGGAAGAAGCATTGGAAAATGGTAGGAGGAGAAAAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGAAAGCAATGGAGTTGTGGATGGGCATCTGGATGGTGCAAAAGTCCTAAGTAACGATAATCATAGTATACAAAATGGAGACGTGGTAATTGCGATAGAACCATCTGGGCAAAACAATCCATTGGATAGAAGTGGGATCAAGCCTTTAAATCCTGCTTCAAAAAAGACACCTAAGAAGCTTAATTCAGAGCCGAAAGAACCAACCAAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTCGAAGGCTGATAAGGAGGATCCATCAGAGAAGAATAGTGAAGAACTGAGGAAAGAATATTATGAACGGGAGATGGAGAAACGATTTGTTCGGAGAAGCCCATTAGGTAAGGACAGAGATTATAATAGGTATTGGTGGTTTGGTCGTGATGGGAGGATATTTGTTGAAAGCTGCGACTCCAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTCGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAACTAGAGAAATATTATACCAAAATATGTTCAGAACTCCAGAAAAGGTCGAAGGATTTGATGCACAGGATTATAGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCTAGGCAGAACCCTGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAAGAAGAATAG 2115 0.4052 MPLLRRKPFALAKPPEELKPDELVYQIRFTKEIFRDYTDYLKRLNLYRQRVWTCKVTGKTGLTYEEAMVSEQHATEKVQQFPKELMTTALGIIQYSMLPLKDLADSIGEKLQERLFVGAELHGKKDDAVHPCRILKVIEKGVDTFCYEVAWLDKNKNISDQGELSAEHLVHKKPLFSRNVLKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRRRVFYRDGLLICSKKRKNEESREDAGNGKRKKSDGAQVEDSCQEKENVQHKNKAIKYPIDDLLVKPSPDDPVFTNRPSPSKDFNIPMSCVGDLLMVWDMLNSFGRLLHLLPYSLEDFENAICHKDSNVVLLVESHAALFRLLIKDDDEYSSALKNRKLKSKITMINWTEYLCYFLEVINIPELRCHEATIKRGHYGLVDVSAKLEILGELVNRALETTIFREKLEEIIEQRQALRREEALENGRRRKEEKERLKAESESNGVVDGHLDGAKVLSNDNHSIQNGDVVIAIEPSGQNNPLDRSGIKPLNPASKKTPKKLNSEPKEPTKNGKELSRKESPKQSKADKEDPSEKNSEELRKEYYEREMEKRFVRRSPLGKDRDYNRYWWFGRDGRIFVESCDSKEWGYYSSKEELDALMSSLNCKGERERALRKQLEKYYTKICSELQKRSKDLMHRIIDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01246 704 MobiDBLite consensus disorder prediction 506 573 - -
Spst3g01246 704 MobiDBLite consensus disorder prediction 236 266 - -
Spst3g01246 704 Coils Coil 452 476 - -
Spst3g01246 704 SMART testlast3 303 364 IPR018501 -
Spst3g01246 704 Pfam DDT domain 304 361 IPR018501 -
Spst3g01246 704 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Spst3g01246 704 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 702 - -
Spst3g01246 704 MobiDBLite consensus disorder prediction 458 492 - -
Spst3g01246 704 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Spst3g01246 704 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Spst3g01246 704 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 586 651 IPR028941 -
Spst3g01246 704 MobiDBLite consensus disorder prediction 458 477 - -
Spst3g01246 704 MobiDBLite consensus disorder prediction 531 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01246 Spst-Chr3 15950435 15955641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01246 573 650 Homeobox Transcription Factor Family AT5G44180 41.379 3.41e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Spst3g01246 WAC_Acf1_DNA_bd 3.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01246 - - var:108323886 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01246 3 15950435 15955641 Spst3g01246 3 15950435 15955641 ECH
Spst3g01246 3 15950435 15955641 Spst9g01834 9 22645733 22650313 PCT