Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g01246 | ATGCCTCTTTTAAGGAGAAAGCCTTTTGCGTTGGCCAAGCCCCCTGAGGAGTTGAAGCCAGACGAACTTGTCTACCAAATTCGATTTACGAAAGAAATCTTTCGAGATTATACTGATTATTTGAAGCGATTGAATCTATACCGCCAGAGGGTTTGGACGTGCAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACTGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTACTGCTTTAGGGATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGCAGTACATCCATGCAGAATATTAAAAGTAATTGAGAAAGGAGTTGACACATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGATCAAGGAGAACTCAGTGCAGAACATTTGGTGCATAAGAAGCCACTTTTTAGTAGGAATGTTTTGAAGTCTTTTATTCGGGAGTCTACATATCGGAATGCCCCTTGGGTTTTGCATGATGAACTAGCAAAAAATCATGGAATATCAACTGATATTCCTGAGGAATTAAGAAGAAGGGTTTTTTACAGAGATGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACGGGAAGATGCTGGTAATGGTAAAAGGAAAAAGTCGGATGGGGCACAAGTCGAGGATTCTTGCCAAGAGAAAGAAAATGTTCAACACAAGAATAAAGCTATCAAATACCCCATTGATGATCTATTGGTCAAGCCTAGTCCAGATGATCCTGTTTTCACTAATCGTCCTTCTCCATCAAAAGACTTCAATATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATATGCTCAATTCCTTTGGTAGACTGTTGCACCTGTTGCCCTACTCTCTGGAAGATTTTGAAAATGCAATCTGCCACAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTCCGACTTCTCATCAAAGATGATGATGAATATTCTTCAGCTTTGAAGAACCGAAAGCTGAAGTCTAAGATTACAATGATTAATTGGACAGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCAGAACTGCGGTGCCATGAAGCAACTATAAAGCGTGGACATTATGGCCTTGTAGATGTCAGTGCTAAATTAGAAATCTTGGGCGAATTGGTCAATCGAGCCCTTGAAACCACAATTTTCAGGGAAAAGTTAGAAGAGATTATTGAACAGCGGCAGGCACTTAGAAGGGAAGAAGCATTGGAAAATGGTAGGAGGAGAAAAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGAAAGCAATGGAGTTGTGGATGGGCATCTGGATGGTGCAAAAGTCCTAAGTAACGATAATCATAGTATACAAAATGGAGACGTGGTAATTGCGATAGAACCATCTGGGCAAAACAATCCATTGGATAGAAGTGGGATCAAGCCTTTAAATCCTGCTTCAAAAAAGACACCTAAGAAGCTTAATTCAGAGCCGAAAGAACCAACCAAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTCGAAGGCTGATAAGGAGGATCCATCAGAGAAGAATAGTGAAGAACTGAGGAAAGAATATTATGAACGGGAGATGGAGAAACGATTTGTTCGGAGAAGCCCATTAGGTAAGGACAGAGATTATAATAGGTATTGGTGGTTTGGTCGTGATGGGAGGATATTTGTTGAAAGCTGCGACTCCAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTCGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAACTAGAGAAATATTATACCAAAATATGTTCAGAACTCCAGAAAAGGTCGAAGGATTTGATGCACAGGATTATAGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCTAGGCAGAACCCTGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAAGAAGAATAG | 2115 | 0.4052 | MPLLRRKPFALAKPPEELKPDELVYQIRFTKEIFRDYTDYLKRLNLYRQRVWTCKVTGKTGLTYEEAMVSEQHATEKVQQFPKELMTTALGIIQYSMLPLKDLADSIGEKLQERLFVGAELHGKKDDAVHPCRILKVIEKGVDTFCYEVAWLDKNKNISDQGELSAEHLVHKKPLFSRNVLKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRRRVFYRDGLLICSKKRKNEESREDAGNGKRKKSDGAQVEDSCQEKENVQHKNKAIKYPIDDLLVKPSPDDPVFTNRPSPSKDFNIPMSCVGDLLMVWDMLNSFGRLLHLLPYSLEDFENAICHKDSNVVLLVESHAALFRLLIKDDDEYSSALKNRKLKSKITMINWTEYLCYFLEVINIPELRCHEATIKRGHYGLVDVSAKLEILGELVNRALETTIFREKLEEIIEQRQALRREEALENGRRRKEEKERLKAESESNGVVDGHLDGAKVLSNDNHSIQNGDVVIAIEPSGQNNPLDRSGIKPLNPASKKTPKKLNSEPKEPTKNGKELSRKESPKQSKADKEDPSEKNSEELRKEYYEREMEKRFVRRSPLGKDRDYNRYWWFGRDGRIFVESCDSKEWGYYSSKEELDALMSSLNCKGERERALRKQLEKYYTKICSELQKRSKDLMHRIIDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE | 704 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g01246 | 704 | MobiDBLite | consensus disorder prediction | 506 | 573 | - | - | |
Spst3g01246 | 704 | MobiDBLite | consensus disorder prediction | 236 | 266 | - | - | |
Spst3g01246 | 704 | Coils | Coil | 452 | 476 | - | - | |
Spst3g01246 | 704 | SMART | testlast3 | 303 | 364 | IPR018501 | - | |
Spst3g01246 | 704 | Pfam | DDT domain | 304 | 361 | IPR018501 | - | |
Spst3g01246 | 704 | ProSiteProfiles | DDT domain profile. | 303 | 364 | IPR018501 | - | |
Spst3g01246 | 704 | PANTHER | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A | 1 | 702 | - | - | |
Spst3g01246 | 704 | MobiDBLite | consensus disorder prediction | 458 | 492 | - | - | |
Spst3g01246 | 704 | Pfam | ATP-utilising chromatin assembly and remodelling N-terminal | 24 | 120 | IPR013136 | - | |
Spst3g01246 | 704 | ProSiteProfiles | WAC domain profile. | 22 | 127 | IPR013136 | - | |
Spst3g01246 | 704 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 586 | 651 | IPR028941 | - | |
Spst3g01246 | 704 | MobiDBLite | consensus disorder prediction | 458 | 477 | - | - | |
Spst3g01246 | 704 | MobiDBLite | consensus disorder prediction | 531 | 573 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g01246 | Spst-Chr3 | 15950435 | 15955641 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g01246 | 573 | 650 | Homeobox Transcription Factor Family | AT5G44180 | 41.379 | 3.41e-07 | 52.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | DDT | Spst3g01246 | WAC_Acf1_DNA_bd | 3.4e-29 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g01246 | - | - | var:108323886 | 1224.15 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g01246 | 3 | 15950435 | 15955641 | Spst3g01246 | 3 | 15950435 | 15955641 | ECH | |
Spst3g01246 | 3 | 15950435 | 15955641 | Spst9g01834 | 9 | 22645733 | 22650313 | PCT |