Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01245 ATGGCCTTAGCCACAGTTCGCAGGAACATCGGCACCCACTACTCCAAGTTTGCATCTTCTTTGTCTGTGTTGTCTCGCCATTCCTCAGTCCACAACCCTATCCCTGCGTCTGTTTCTTCCTTTCATAGCCAACCTGTTGGTGGTGATGGATTGCCATCTTACATGCGTGGAGCTGTGCATTGGGAACCCAATAAGCCTCTTTCCATCGAGGACTTTCGCATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACGGGTGAGGTTGTTGAACATGGGGCACTCTCTGACAGCCAAACAATTGAAAGGCTTCCGGTCGGATCGCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAGCTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCCATAACCGGGCAAATGGAACCCTCTATGATGGTGAAACTAGACTCTTTCTTCGAAACAGTGGAAAACCAGTATCTATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTATTACCAGAATCATTGCCATTTACAGAGTCCGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGTGCTATGGCTCACGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCCTCGGATATAATTGCTGTGGATGTTCGGGATGAAAAGCTACAGAAAGCAAAGATATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAGAAGATATTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAGACCACAGACATTTGCGCAGTGCACACTAAGTGTGAAGGATGGTGGAAAAGCCGTAATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCATATGGAGGCAGGGCGAGGCAAGATCTTCCAAAGCTAATTAGATTGGCAGAAACAGGTATCTTCAATCTTGGCCATGCTGTTTCTAGAACATATACCTTTGAGGAGGCAAACAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTTGGCCGAGCTGTCATCGAGATAATCTAA 1281 0.4645 MALATVRRNIGTHYSKFASSLSVLSRHSSVHNPIPASVSSFHSQPVGGDGLPSYMRGAVHWEPNKPLSIEDFRMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGALSDSQTIERLPVGSRVVGAFIMPCGSCSYCSKGHDDLCEAFFAHNRANGTLYDGETRLFLRNSGKPVSMYSMGGLAEYCVVPANGVSVLPESLPFTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKIFGATHTVNSAKEDPIEKIFEITGGKGVDVAVEALGRPQTFAQCTLSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFEEANKAFQDLNEGKIVGRAVIEII 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01245 426 Pfam Zinc-binding dehydrogenase 255 386 IPR013149 -
Spst3g01245 426 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 112 126 IPR002328 GO:0008270|GO:0016491
Spst3g01245 426 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 217 390 IPR036291 -
Spst3g01245 426 Gene3D - 232 369 - -
Spst3g01245 426 SMART PKS_ER_names_mod 62 423 IPR020843 GO:0016491
Spst3g01245 426 CDD Zn_ADH10 55 424 - -
Spst3g01245 426 Pfam Alcohol dehydrogenase GroES-like domain 80 210 IPR013154 -
Spst3g01245 426 Gene3D - 59 415 - -
Spst3g01245 426 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 54 423 - -
Spst3g01245 426 SUPERFAMILY GroES-like 51 258 IPR011032 -
Spst3g01245 426 FunFam Alcohol dehydrogenase (Zinc) 59 246 - -
Spst3g01245 426 FunFam Sorbitol dehydrogenase 232 370 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01245 72 425 Monolignol Biosynthesis Gene Families AT4G37990 26.816 2.06e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01245 - - gmx:100802431 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01245 3 15944975 15948221 Spst3g01245 3 15944975 15948221 ECH