Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01237 ATGGGTCGAACACCCTGCTGTGAAAAACAACACATTTTTAAAGGAACATGGTCTAAGGAGGAAGATGAGCTCCTCACTAGTTATGTCAACTCTCATGGAGAAGGCAACTGGAGATGTGTTCCTAAGGCAGCTGGTTTGCTTCGGTGTGGCAAAAGTTGCCGACTCAGATGGATGAATTACCTAAGACCCAACCTCAAGAGGGGGTACTTTACTCAAGCAGAAACTGATGTCATCATTCAGCAGCATACCTTACTAGGAAACAAATGGTCAGAGATGGCGAAAATTTTACCTGGAAGAACAGATAACGAGATTAAAAACTACTGGAACACCCACCTCAAACGCCATCTCTATGCCAATGGAATCGACCCTGTAACCCATAAACCACTCAAAAAGTACACCACCGACACCACAGATCTACCTGCTAACTGTCAAGTGTCTGAGGTTGCCACCGCAAGCGAGAATGGAGCTAACAACAGCAACAACACTAGTTCCAGCTTCACCATAGATTGCAGCAACAAAATCCACTATTTTAATGTTTTTCTCAATTCAAAGGTGCAGATTAGCAGTGACGATTGCTCAGCTGGATATAAAGGTGGTTGCTCAAACAACAGTAGTGATGTTACCGTACAGGAAGCTCATCCTCCACTCAACTTGGACCTTTCCTTATCTCCTCCACCAAGTAAACCCCAAGATTTTTGCATGAACCTCGAAGGGACGCAACCACAAGGGCAAGTTTTGTCCTTGGGGAATGTGAATGTTAGCGGTGCTAAGCGAAGCGTGTGCCTGTGGTGCAATCTAGGGTTGCAAAGTAACAATGCTTGTAGCTGCAAAGGCAAGGGTTGTTGTGCTGCTTCTGCAGTTACTCCACCTGCTGGAATTCGTTTCTGTACTACCAATAAGAGGAAAAGTGTCATTGACACAGCACTTGTGAAAATGAGAAGACTAAGAACACAGTTCGAACTTGAAAGAAAAATGTTGAGATTAGTCACACGTTTGAGCCTCTGGTTGGACGGCACACATGATTCCTTTTGCGAGCATGCTCTTCACTACGGTGCTGTGTCCGACATGCATATCCATACCAACAATCTTCTCTTGCTGATGCGTCCAGTGGAAGATGCTTTTGGTACTTACATATTTGGGTATAGAGACGCGAAACCAGTACAGGAGAAAGGACACCAACTTGTGATGACAATCACTGCATGA 1203 0.448 MGRTPCCEKQHIFKGTWSKEEDELLTSYVNSHGEGNWRCVPKAAGLLRCGKSCRLRWMNYLRPNLKRGYFTQAETDVIIQQHTLLGNKWSEMAKILPGRTDNEIKNYWNTHLKRHLYANGIDPVTHKPLKKYTTDTTDLPANCQVSEVATASENGANNSNNTSSSFTIDCSNKIHYFNVFLNSKVQISSDDCSAGYKGGCSNNSSDVTVQEAHPPLNLDLSLSPPPSKPQDFCMNLEGTQPQGQVLSLGNVNVSGAKRSVCLWCNLGLQSNNACSCKGKGCCAASAVTPPAGIRFCTTNKRKSVIDTALVKMRRLRTQFELERKMLRLVTRLSLWLDGTHDSFCEHALHYGAVSDMHIHTNNLLLLMRPVEDAFGTYIFGYRDAKPVQEKGHQLVMTITA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01237 400 SMART sant 13 63 IPR001005 -
Spst3g01237 400 SMART sant 66 114 IPR001005 -
Spst3g01237 400 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst3g01237 400 CDD SANT 16 61 IPR001005 -
Spst3g01237 400 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst3g01237 400 FunFam MYB-related transcription factor 13 66 - -
Spst3g01237 400 FunFam MYB transcription factor 68 129 - -
Spst3g01237 400 CDD SANT 70 112 IPR001005 -
Spst3g01237 400 PANTHER F14D16.11-RELATED 1 189 - -
Spst3g01237 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst3g01237 400 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst3g01237 400 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst3g01237 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst3g01237 400 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst3g01237 400 Gene3D - 13 66 - -
Spst3g01237 400 Gene3D - 69 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01237 Spst-Chr3 15865646 15870797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01237 1 276 MYB Transcription Factor Family AT4G38620 43.116 2.82e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g01237 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01237 K09422 - gmx:100808083 241.121