Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01198 ATGCGTGTGTGTGAAGGAAACGCAAGAAGAAAGTATAGAGGAGTGAGACAGCGACCGTGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTGTGGCTGGGAACTTTTCCCACCGCTGAAGCTGCTGCACTCGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTATCTGTGGAATTAGGTTACCTCACTAATCGTCCACCATCATCACAAACCTCTTCAACTCCCTTCCACCTTCTTCGTCATCACACTGCAACTAATACTCATGCTATTCCCTTGCCTTCCAGTGACGCGGTTCTTTCTCCTCCTCCCTTAACCTCGTCTTCTTCGCCCTCGTCTTCAACTTTTTCGATGAAATCCGCAGGTTCTTCTTCTGAACCTCCTACGAAACGGACAACTGATTTCGATGCCAAACTCAAACGTTGA 477 0.4885 MRVCEGNARRKYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGSKAKLNFPEKVHLSVELGYLTNRPPSSQTSSTPFHLLRHHTATNTHAIPLPSSDAVLSPPPLTSSSSPSSSTFSMKSAGSSSEPPTKRTTDFDAKLKR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01198 158 FunFam Ethylene-responsive transcription factor 2 10 69 - -
Spst3g01198 158 PANTHER DNA-BINDING DOMAIN 7 136 IPR044808 GO:0003700|GO:0009873
Spst3g01198 158 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Spst3g01198 158 MobiDBLite consensus disorder prediction 81 158 - -
Spst3g01198 158 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 MobiDBLite consensus disorder prediction 81 147 - -
Spst3g01198 158 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Spst3g01198 158 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01198 Spst-Chr3 15525370 15525846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01198 9 103 AP2-EREBP Transcription Factor Family AT5G61890 69.792 4.71e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst3g01198 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01198 - - vra:106766671 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01198 3 15525370 15525846 Spst3g01198 3 15525370 15525846 ECH
Spst3g01198 3 15525370 15525846 Spst9g01781 9 20082605 20084341 ECH
Spst3g01198 3 15525370 15525846 Spst1g00250 1 3436212 3439012 ECH
Spst3g01198 3 15525370 15525846 Spst9g01781 9 20082605 20084341 PCT