Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01195 ATGCCTTTTCAAATCATGGATCAGAGGGGCGTTTCTGCTTCATCACACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCAATATCCATTAATGACGATTATCCACAAGGAAGCAATGGAGTGGTAGCATCACCAGGCAGGAATTTTGACAGTACACCTCCCCTTGATGTAAATGCAAAAGCTGGTTTGTTGATGTCGCAGGCTAGTCTACCTGGGGATAATATAGATTCCAAGGAATCATCGAATTATCGTCCCAAATCATTGTCTGATGCATCTCTGCAGTCTGCACCCACCTCATATGGTTTAATTGGGAACAGGATTGTGACAAATGCTGCCCCCTGTGAAAGTAGTTTATTCTCAAGTTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATCAGCTCATTACTGGTGGTTTCCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTATCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAAAATAAATGGTCTTGATGGAGATTATGGTTTCCTTGGAGGTTCTAAAGGAAAACTTCCATTTGGTGAGCAGCCTTCTAGAACACTTTTCGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTTCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGCCTTGATTCATCTGTTTTAAATGACGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATTACAAATTTATAGAGTTTTATGATGTTCGAGCTGCGGAATCTGCTCTTCGTGCTTTGAACAAGATTGACATTTCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAATCTCATAAGGGGCAAGATGAGCGAGATTTTGGTCAAAGTATTATGGACAATTTGCCATTAAGACCAAAGGCAACAGGGTCTTCTGGTGTAATTGGATCTGGATGCTTGGATAATGGATATAGTCAGAGGTTTCAATCTACAGTGCGGCAACCAATGAATGCATTTGTTGATAATGCATTCATTAATATGAACACTGGTATTCGCAACACTATGAGAGGGGCATCTGCTGGAAAAGTTTCTGGTCTTTGTGAGTCTAGTAGCTATGTTGATGCAATGAACTTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACTATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATTGGATCAACTGGGAACACGGCAGAATTTAATGCTGGAGGAAATGGGATACGCCCACATGGACTTTATCAAATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCTTCAAGTAATGTGCTTTGGCAAAAATCGCCATCATTTGTTAATGATGCTTGTTCCCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCTCATTTACTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCACCCGATGCTTCTGGTTTTCGCTTGGGTTCTCTTGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCTCTGGATTTTCCTTCTCACAATGTGTTCTCTCATGTTGGTGGGAATGGCACTGAACTGACATGCAATGCTGGACAGAACTCTCCCAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAACAAGCACCAACAATGTTGATAAGAAGCAATATGAACTTGACCTAGGGCGCATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTATGACTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTGTCCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAGGTGGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATCGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGTTGCCGTCCTATTCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACCGAGACCAGGAAAATCTCGCACTGCAGGCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGGAAGTGGAGAAGAGTCTGGTTTAGACTCTTCAAAAAACTAA 2838 0.4154 MPFQIMDQRGVSASSHFFEDVSFRSERNVGLRKPISINDDYPQGSNGVVASPGRNFDSTPPLDVNAKAGLLMSQASLPGDNIDSKESSNYRPKSLSDASLQSAPTSYGLIGNRIVTNAAPCESSLFSSSMSEIFSRKLRLFGNDVQSDQLITGGFPEEEPYKSLEEMEADTIGNLLPDEDDLLSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKKINGLDGDYGFLGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHYKFIEFYDVRAAESALRALNKIDISGKQIKLEPGHPSLMHQSHKGQDERDFGQSIMDNLPLRPKATGSSGVIGSGCLDNGYSQRFQSTVRQPMNAFVDNAFINMNTGIRNTMRGASAGKVSGLCESSSYVDAMNFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGATEASDGRHIQGIGSTGNTAEFNAGGNGIRPHGLYQMWNSSNLQQQPSSSNVLWQKSPSFVNDACSPSLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGNGTELTCNAGQNSPKQLSHVFPVRHPMSSMSKFDTTNERMRNLYHRRNETSTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIVPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRPRPGKSRTAGGGEENRSQGSPSALGSGEESGLDSSKN 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01195 945 SMART rrm1_1 778 854 IPR000504 GO:0003723
Spst3g01195 945 SMART rrm1_1 254 322 IPR000504 GO:0003723
Spst3g01195 945 SMART rrm1_1 339 407 IPR000504 GO:0003723
Spst3g01195 945 FunFam MEI2-like protein 5 isoform 2 242 336 - -
Spst3g01195 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 405 IPR000504 GO:0003723
Spst3g01195 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 319 IPR000504 GO:0003723
Spst3g01195 945 CDD RRM3_MEI2_like 779 864 IPR034454 -
Spst3g01195 945 Gene3D - 247 336 IPR012677 -
Spst3g01195 945 FunFam Protein MEI2-like 1 337 429 - -
Spst3g01195 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 411 IPR000504 GO:0003723
Spst3g01195 945 MobiDBLite consensus disorder prediction 77 102 - -
Spst3g01195 945 MobiDBLite consensus disorder prediction 39 53 - -
Spst3g01195 945 Pfam RNA recognition motif 2 776 872 IPR007201 -
Spst3g01195 945 PANTHER RNA RECOGNITION MOTIF-CONTAINING 84 929 - -
Spst3g01195 945 SUPERFAMILY RNA-binding domain, RBD 250 409 IPR035979 GO:0003676
Spst3g01195 945 SUPERFAMILY RNA-binding domain, RBD 778 863 IPR035979 GO:0003676
Spst3g01195 945 CDD RRM1_MEI2_like 252 327 IPR034453 -
Spst3g01195 945 MobiDBLite consensus disorder prediction 76 102 - -
Spst3g01195 945 Gene3D - 337 428 IPR012677 -
Spst3g01195 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 326 IPR000504 GO:0003723
Spst3g01195 945 MobiDBLite consensus disorder prediction 887 945 - -
Spst3g01195 945 MobiDBLite consensus disorder prediction 34 59 - -
Spst3g01195 945 MobiDBLite consensus disorder prediction 919 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01195 Spst-Chr3 15469826 15476052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01195 251 404 Eukaryotic Initiation Factors Gene Family AT1G71770 26.380 5.60e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01195 - - gmx:106798747 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01195 3 15469826 15476052 Spst3g01195 3 15469826 15476052 ECH