Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g01195 | ATGCCTTTTCAAATCATGGATCAGAGGGGCGTTTCTGCTTCATCACACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCAATATCCATTAATGACGATTATCCACAAGGAAGCAATGGAGTGGTAGCATCACCAGGCAGGAATTTTGACAGTACACCTCCCCTTGATGTAAATGCAAAAGCTGGTTTGTTGATGTCGCAGGCTAGTCTACCTGGGGATAATATAGATTCCAAGGAATCATCGAATTATCGTCCCAAATCATTGTCTGATGCATCTCTGCAGTCTGCACCCACCTCATATGGTTTAATTGGGAACAGGATTGTGACAAATGCTGCCCCCTGTGAAAGTAGTTTATTCTCAAGTTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATCAGCTCATTACTGGTGGTTTCCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTATCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAAAATAAATGGTCTTGATGGAGATTATGGTTTCCTTGGAGGTTCTAAAGGAAAACTTCCATTTGGTGAGCAGCCTTCTAGAACACTTTTCGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTTCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGCCTTGATTCATCTGTTTTAAATGACGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATTACAAATTTATAGAGTTTTATGATGTTCGAGCTGCGGAATCTGCTCTTCGTGCTTTGAACAAGATTGACATTTCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAATCTCATAAGGGGCAAGATGAGCGAGATTTTGGTCAAAGTATTATGGACAATTTGCCATTAAGACCAAAGGCAACAGGGTCTTCTGGTGTAATTGGATCTGGATGCTTGGATAATGGATATAGTCAGAGGTTTCAATCTACAGTGCGGCAACCAATGAATGCATTTGTTGATAATGCATTCATTAATATGAACACTGGTATTCGCAACACTATGAGAGGGGCATCTGCTGGAAAAGTTTCTGGTCTTTGTGAGTCTAGTAGCTATGTTGATGCAATGAACTTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACTATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATTGGATCAACTGGGAACACGGCAGAATTTAATGCTGGAGGAAATGGGATACGCCCACATGGACTTTATCAAATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCTTCAAGTAATGTGCTTTGGCAAAAATCGCCATCATTTGTTAATGATGCTTGTTCCCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCTCATTTACTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCACCCGATGCTTCTGGTTTTCGCTTGGGTTCTCTTGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCTCTGGATTTTCCTTCTCACAATGTGTTCTCTCATGTTGGTGGGAATGGCACTGAACTGACATGCAATGCTGGACAGAACTCTCCCAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAACAAGCACCAACAATGTTGATAAGAAGCAATATGAACTTGACCTAGGGCGCATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTATGACTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTGTCCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAGGTGGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATCGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGTTGCCGTCCTATTCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACCGAGACCAGGAAAATCTCGCACTGCAGGCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGGAAGTGGAGAAGAGTCTGGTTTAGACTCTTCAAAAAACTAA | 2838 | 0.4154 | MPFQIMDQRGVSASSHFFEDVSFRSERNVGLRKPISINDDYPQGSNGVVASPGRNFDSTPPLDVNAKAGLLMSQASLPGDNIDSKESSNYRPKSLSDASLQSAPTSYGLIGNRIVTNAAPCESSLFSSSMSEIFSRKLRLFGNDVQSDQLITGGFPEEEPYKSLEEMEADTIGNLLPDEDDLLSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKKINGLDGDYGFLGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHYKFIEFYDVRAAESALRALNKIDISGKQIKLEPGHPSLMHQSHKGQDERDFGQSIMDNLPLRPKATGSSGVIGSGCLDNGYSQRFQSTVRQPMNAFVDNAFINMNTGIRNTMRGASAGKVSGLCESSSYVDAMNFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGATEASDGRHIQGIGSTGNTAEFNAGGNGIRPHGLYQMWNSSNLQQQPSSSNVLWQKSPSFVNDACSPSLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGNGTELTCNAGQNSPKQLSHVFPVRHPMSSMSKFDTTNERMRNLYHRRNETSTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIVPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRPRPGKSRTAGGGEENRSQGSPSALGSGEESGLDSSKN | 945 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g01195 | 945 | SMART | rrm1_1 | 778 | 854 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | SMART | rrm1_1 | 254 | 322 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | SMART | rrm1_1 | 339 | 407 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | FunFam | MEI2-like protein 5 isoform 2 | 242 | 336 | - | - | |
Spst3g01195 | 945 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 340 | 405 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 319 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | CDD | RRM3_MEI2_like | 779 | 864 | IPR034454 | - | |
Spst3g01195 | 945 | Gene3D | - | 247 | 336 | IPR012677 | - | |
Spst3g01195 | 945 | FunFam | Protein MEI2-like 1 | 337 | 429 | - | - | |
Spst3g01195 | 945 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 338 | 411 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 77 | 102 | - | - | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 39 | 53 | - | - | |
Spst3g01195 | 945 | Pfam | RNA recognition motif 2 | 776 | 872 | IPR007201 | - | |
Spst3g01195 | 945 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 84 | 929 | - | - | |
Spst3g01195 | 945 | SUPERFAMILY | RNA-binding domain, RBD | 250 | 409 | IPR035979 | GO:0003676 | |
Spst3g01195 | 945 | SUPERFAMILY | RNA-binding domain, RBD | 778 | 863 | IPR035979 | GO:0003676 | |
Spst3g01195 | 945 | CDD | RRM1_MEI2_like | 252 | 327 | IPR034453 | - | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 76 | 102 | - | - | |
Spst3g01195 | 945 | Gene3D | - | 337 | 428 | IPR012677 | - | |
Spst3g01195 | 945 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 326 | IPR000504 | GO:0003723 | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 887 | 945 | - | - | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 34 | 59 | - | - | |
Spst3g01195 | 945 | MobiDBLite | consensus disorder prediction | 919 | 945 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g01195 | Spst-Chr3 | 15469826 | 15476052 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g01195 | 251 | 404 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.380 | 5.60e-10 | 61.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g01195 | - | - | gmx:106798747 | 1667.13 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g01195 | 3 | 15469826 | 15476052 | Spst3g01195 | 3 | 15469826 | 15476052 | ECH |