Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01192 ATGCGTTTCGCAAATCTAGATGACACTCCGATGTTCCGCCAACAGATCCAGTGTTTGGAGGAAATTGCAGAATCGTTGCGCGCAAGATGCTGCAAGTTCTATAAGGGATGTCGAAAGTATACTGAAGGTCTTGGAGAGGCATATGATGGGGACATCGCATTTGCAAGTGCCATAGAAAACTTTGGAGGAGGGCAAAATGATCCTCATTTTGTTACTTTGGGAGGACCTGTTATGACCAAATTTACTATAGCGTTGAGAGAAATCAGTGCATACAAGGAACTGCTCCGGTCACAAGTAGAGCACATTTTCAATGATAGGTTACAACCCATTGTGAATGTTGACATCCATGAAGTCAAGGAAGCTCGCAAGCGTTTCGATAAATCCTCCCTTGTATATGATCAGGCACGTGAAAAATTTATGTCACTGAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTGAAGAGGAACTGCAGGAGGCAAGAACATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATAACATTGAGGTCAAGAGGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGAATGAGATGGAACCTTTCATTAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTACAATAACGAGCAGATTGAACTTTATCAAAGAATGCAAGACTACAAGAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAGTGGTCCTTATGGTTCTCCTAGTGGAGACTCCGCACATCCGTTTTCTAGGATATCAAATGAAGTGGCGGATGTAGTAATGGAATCTGCTGCGAATGGAAAGGTTCAAATCATTCGACAAGGACATCTTTCAAAACGATCCTCCAATTTGAGAGCTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTGTTCTACTACCGCAAACCATGGAGTGTGTCATATGGCAGCAATCAACCATCTCCAAAGAAGATTAGTGGCACTGAAAACGGTTCTGGGATTCTGAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCATGATGAAAGATCTATAGCACGTCATACGGTAAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCACCATCAAAGAACTACACGTTGCAGGCAGAAAATGCGGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCACCTTGTTGAGTGTCCAAACACTGGGAACGCCTCTCTCAGCTGACTCAGAAAACGGAGACTCTGATGACAATATTGATAACTTGGAAAGTTGTCCAGATGATGATAACACTTTGACAGTGAAGTCTGCATTCAATAGTTCCACCCATAATAACCACTCACGTTCGACTAGAAGTATGCAGTTACATAAGCACAATATGAGAATTGAAAAGCCAATTGATGTTCTTAGAAGTGTGAACGGAAATGATAAATGTGCTGATTGTGGTAAACCCGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTCGATGTTAAAGTTTGGGATTCCTCTGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGTTGCTACATTCACAAAGTAATTTGCAAACAGTTGATGCACCTGATAGGTAA 1794 0.4086 MRFANLDDTPMFRQQIQCLEEIAESLRARCCKFYKGCRKYTEGLGEAYDGDIAFASAIENFGGGQNDPHFVTLGGPVMTKFTIALREISAYKELLRSQVEHIFNDRLQPIVNVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIEEELQEARTSFEEARFNLVGTLNNIEVKRRFEFLEAVTGIMDAHFRYFQQGYQLLNEMEPFINEIMDYVHQSRENYNNEQIELYQRMQDYKKQVYEESRLSLSGPYGSPSGDSAHPFSRISNEVADVVMESAANGKVQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLFYYRKPWSVSYGSNQPSPKKISGTENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIATLLSVQTLGTPLSADSENGDSDDNIDNLESCPDDDNTLTVKSAFNSSTHNNHSRSTRSMQLHKHNMRIEKPIDVLRSVNGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFANSVWEELLHSQSNLQTVDAPDR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01192 597 SUPERFAMILY ArfGap/RecO-like zinc finger 496 586 IPR037278 -
Spst3g01192 597 Gene3D - 285 436 IPR011993 -
Spst3g01192 597 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 479 596 - -
Spst3g01192 597 CDD BAR_SFC_plant 15 215 IPR035670 -
Spst3g01192 597 PRINTS HIV Rev interacting protein signature 551 572 IPR001164 GO:0005096
Spst3g01192 597 PRINTS HIV Rev interacting protein signature 509 528 IPR001164 GO:0005096
Spst3g01192 597 PRINTS HIV Rev interacting protein signature 528 545 IPR001164 GO:0005096
Spst3g01192 597 ProSiteProfiles ARF GTPase-activating proteins domain profile. 497 580 IPR001164 GO:0005096
Spst3g01192 597 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Spst3g01192 597 Coils Coil 227 247 - -
Spst3g01192 597 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Spst3g01192 597 SUPERFAMILY PH domain-like 203 428 - -
Spst3g01192 597 CDD PH_ACAP 295 432 - -
Spst3g01192 597 Gene3D Arf GTPase activating protein 482 596 IPR038508 -
Spst3g01192 597 Pfam PH domain 294 427 IPR001849 -
Spst3g01192 597 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Spst3g01192 597 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Spst3g01192 597 Pfam Putative GTPase activating protein for Arf 500 588 IPR001164 GO:0005096
Spst3g01192 597 PANTHER CENTAURIN/ARF 5 587 IPR045258 GO:0005096
Spst3g01192 597 SMART arf_gap_3 497 597 IPR001164 GO:0005096
Spst3g01192 597 SMART PH_update 293 430 IPR001849 -
Spst3g01192 597 CDD ArfGap 500 596 - -
Spst3g01192 597 Pfam BAR domain of APPL family 6 234 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01192 Spst-Chr3 15414918 15428110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01192 509 594 C2H2 Transcription Factor Family AT4G21160 51.724 2.71e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01192 K12489 - gmx:100792517 1021.92