Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01187 ATGGCGTCGTCGGAGGTATCGATCAAGGGTAATTCGGTGAACGGAAAAGGAGAAAACAGTTGCGGTGGCTACAACAACGGCAACGATGTTAGGAACGGTGGAGGAGAGGCTCATAATGTTTCTTCTTCATCATCCGCGAGAGACTCGGAAACTGCGCTTTACCGGGAGCTTTGGCACGCCTGCGCGGGTCCGCTCGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCCCAAGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTGACCTTGCTTCCTGAGCCAAATCAAGATGAAAATGCGGTGGAGAAAGAGGGTCCTCCGGCTCCGCCTCCTCGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCTTCCGATACGAGTACTCACGGTGGGTTTTCGGTGTTGAGACGACATGCTGATGAATGCCTTCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTACACGGGAACGAGTGGCGATTCAGGCATATTTTTCGAGGGCAACCGCGCAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCCTCATCGGTTATTTCAAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTCACCGTGTATTACAAACCTAGGACTAGTCCAGCTGAATTTATAGTTCCGTATGATCAATACATGGAGTCTTTGAAAAACAATTACACCATTGGGATGCGGTTCAAAATGAGGTTCGAAGGTGAAGAGGCTCCCGAGCAGAGATTTACCGGTACCATTGTTGGAATTGAAGATGCTGATCCCAATAGGTGGCCTAACTCCAAATGGAGAAGTCTGAAGGTACGATGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAACCTGCTCTCGCTCCTCCTGCTCTCAACCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCTGTTCTTACTCGTGAAGCATCTTCTAAAGTGAGTGTAGACCCTTTACCAGCAACTGGATTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGAAATTTTGCTGAAAGCAATGAATCTGACACAGCAGAGAGGTCTGCGTGGTCATCTGCTGCAGATGATGAAAAGATTGATGTTGTTTCCACCTCGAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTACTTTCTGGCTTTGGGGCCCATGGAGATCAATCTTCCCATTCAGCCTTTGTTGATCAAAATGGTCCTGTAGCTAACCTAAGTAGAAAACATTTTTTGGACCGCGATGGCAAGCATAGTGTTCTTAGTCCATGGCCTGTAGTGCCATCTAATCTATCATTGAATCTCTTGGACCCTAATACAAAAGGCTCTGCTCAAGGTGGTGATACAACGTGTCAGGTTCGAGGCAATTTAAGGTATAGCAGCGCATTTGGTGACTATACGGTCCTTCATGGACACAAAGTTGAGCATTCACATGGAAACATTTTGATGCCACCGCCAGTGTCAGCTCAATATGAGAGTCCTCGTTCTAGAGAACTGTTACCCAAACCAATATCAGGAAAACCTTGTGAGGTATCAAAACCGAAGGACGGCGGTGACTGTAAGCTATTTGGCATCTCACTTCTCAGTAGCCCCATTGCACTCGACCCTTCTGTAACACAAAGAAATGTTGCAATTGATCCAATTGGTCACATGCATACTATACCCCAGCAGCGTACATTTGAAAATGACCCGAAGTTTGCGACTTCTAGGGGTTCTAAACCGGCTGATGGTCTGCTGATTGATGACCATGAAAAACCGTCACAAACTTCTGAGCCCCATTTGAAAGATGTTCAACCCAAATCTAATAATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTGACTAAATTCAGTGCATATGATGAATTAATTGGTGAATTGGATCAGCTGTTTGAATTTGGAGGTGAATTAACATCTCCCCAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGCGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCTATGGTGCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCGGCTAGTGAAGGTGCAGACGCACAAGAAAGTAAATGTCAGCTGAATCATTAA 2556 0.4687 MASSEVSIKGNSVNGKGENSCGGYNNGNDVRNGGGEAHNVSSSSSARDSETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPNRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPATGFQRVLQGQELSTLRGNFAESNESDTAERSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGAHGDQSSHSAFVDQNGPVANLSRKHFLDRDGKHSVLSPWPVVPSNLSLNLLDPNTKGSAQGGDTTCQVRGNLRYSSAFGDYTVLHGHKVEHSHGNILMPPPVSAQYESPRSRELLPKPISGKPCEVSKPKDGGDCKLFGISLLSSPIALDPSVTQRNVAIDPIGHMHTIPQQRTFENDPKFATSRGSKPADGLLIDDHEKPSQTSEPHLKDVQPKSNNSGSARSCTKVHKKGIALGRSVDLTKFSAYDELIGELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGADAQESKCQLNH 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01187 851 Gene3D - 322 392 - -
Spst3g01187 851 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Spst3g01187 851 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Spst3g01187 851 MobiDBLite consensus disorder prediction 717 735 - -
Spst3g01187 851 MobiDBLite consensus disorder prediction 411 426 - -
Spst3g01187 851 CDD B3_DNA 157 259 IPR003340 GO:0003677
Spst3g01187 851 MobiDBLite consensus disorder prediction 392 432 - -
Spst3g01187 851 Gene3D - 156 261 IPR015300 -
Spst3g01187 851 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Spst3g01187 851 Gene3D - 729 822 - -
Spst3g01187 851 FunFam Auxin response factor 157 261 - -
Spst3g01187 851 Pfam AUX/IAA family 718 821 IPR033389 -
Spst3g01187 851 ProSiteProfiles PB1 domain profile. 733 815 IPR000270 GO:0005515
Spst3g01187 851 MobiDBLite consensus disorder prediction 1 27 - -
Spst3g01187 851 FunFam Auxin response factor 728 822 - -
Spst3g01187 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 822 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst3g01187 851 SUPERFAMILY CAD & PB1 domains 733 810 - -
Spst3g01187 851 FunFam Auxin response factor 322 394 - -
Spst3g01187 851 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst3g01187 851 MobiDBLite consensus disorder prediction 393 409 - -
Spst3g01187 851 MobiDBLite consensus disorder prediction 701 716 - -
Spst3g01187 851 MobiDBLite consensus disorder prediction 683 736 - -
Spst3g01187 851 MobiDBLite consensus disorder prediction 821 851 - -
Spst3g01187 851 MobiDBLite consensus disorder prediction 1 45 - -
Spst3g01187 851 SMART B3_2 159 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01187 Spst-Chr3 15348069 15351943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01187 1 850 B3 DNA Binding Superfamily AT5G62000 64.450 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst3g01187 AUX_IAA 1.7e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01187 - - gmx:100815956 1478