Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01186 ATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCATGGCCAAACCCAAACGCCAATGAATTAAGCTTGTGTGCTTACAAACCCATCTCCGATATCCATGAGGAATGGCACGTGCCCAACGACAACAACCAAAACCACTCACATATTAGAGACATGGCCTTCTCCACCAACTTCGCTAATAACACGTTACTCCATCAACTGCAACCGTTGCACACTTTCTCTTCTTCCATTAACCTCGGCCTATCTCAAGTGCACAACTTCCTCACTTCTAAACCCTTATTTTACCCGTTGGAGCATGACTTTTGCGCGGGTTCTGAAGTGGGATTTCTTGACACTCAAGCATTGAACAAAGTTGATCATGGTGGTGTCTTCTTCAGTTCAAATGATAATAACCAATCAGCCCTTCCAAATTTAGCAACCATGTGTGCAATGCCTCCCCAACAAGACAGTGTAGGATTTTCGGGATTCAAGAATATTAGTAACTCCGATCACGTGGAGGGTTCAACGAAGGCCTTGCTTCTGAGCAGGTCCAACTTACTGAGACCCCTTGAATCGTTCCACCCATCAGGTGCACAACCAACACTTTTTCAGAAGCGAGCAGCACTTAGAAAAAGCTTGGAAAATAACTGCAAAGGCAAGAGTAAAGGGAATAGTGATAGTAGTAGCAATAAGAGAAAGACGTGTTATAATGGAGAAGGTGTTGAAGGTGGAAGTTTTGAAGGGTCGGGGTTGAATTATGATTCTGATGAGAGTGATGAGAATAAGATGATGGAAGAGGGTGGAAGGAACGGTGGAATCAGCTCGAATGCGAATAGCACCGTCACCGGTGGCGTGGATCAAAAGGGCAAGAAGAAGACATGGATACCTGCTAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTTAGTGATAGACTCTACATGCTGAGATCCGTTGTTCCCAATATTAGCAGAATGGACAGGGCTTCAATACTTGGGGATGCAATAGAGTATTTGAAGGAACTTCTGCAAAGGATAGGTGACCTTCACAATGAATTGGAGTCAGCACCACCAGCTGTCTCTTCATTGACTTCAAGCTTTTTTCATCCCTTGACACCCACTTTACCAACACGTGTGCAAGAAGAACTTTGCCTCAGCTCATTGCCAAGCCCCAATGGCCAACCAGTGAGGGTTGAGGTTGGGTTTCGTGAAGGAAGAGGTGTAAACATCCACATGTTTTGTGAGCGCAAACCTGGTCTCTTGCTGTCTATCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCAGTTATCACCTATTTCAATGGATTTGTTATGGATATTTTCAGAGCTGAGATACACAAAGGTCAAGACGTGCATCCAGAGCTAATCAAAGCAATTCTATTGGACTCAGCTGGCTTCCATAGCATGAGCTAA 1434 0.4498 MSGWMQDTEEQNSASWPNPNANELSLCAYKPISDIHEEWHVPNDNNQNHSHIRDMAFSTNFANNTLLHQLQPLHTFSSSINLGLSQVHNFLTSKPLFYPLEHDFCAGSEVGFLDTQALNKVDHGGVFFSSNDNNQSALPNLATMCAMPPQQDSVGFSGFKNISNSDHVEGSTKALLLSRSNLLRPLESFHPSGAQPTLFQKRAALRKSLENNCKGKSKGNSDSSSNKRKTCYNGEGVEGGSFEGSGLNYDSDESDENKMMEEGGRNGGISSNANSTVTGGVDQKGKKKTWIPAKNLMAERRRRKKLSDRLYMLRSVVPNISRMDRASILGDAIEYLKELLQRIGDLHNELESAPPAVSSLTSSFFHPLTPTLPTRVQEELCLSSLPSPNGQPVRVEVGFREGRGVNIHMFCERKPGLLLSIMRALDNLGIDIHQAVITYFNGFVMDIFRAEIHKGQDVHPELIKAILLDSAGFHSMS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01186 477 SMART finulus 296 345 IPR011598 GO:0046983
Spst3g01186 477 Gene3D - 283 353 IPR036638 GO:0046983
Spst3g01186 477 SUPERFAMILY ACT-like 404 472 IPR045865 -
Spst3g01186 477 ProSiteProfiles ACT domain profile. 406 477 IPR002912 -
Spst3g01186 477 MobiDBLite consensus disorder prediction 267 282 - -
Spst3g01186 477 CDD ACT_UUR-ACR-like 407 466 - -
Spst3g01186 477 MobiDBLite consensus disorder prediction 214 231 - -
Spst3g01186 477 MobiDBLite consensus disorder prediction 210 286 - -
Spst3g01186 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Spst3g01186 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 361 IPR036638 GO:0046983
Spst3g01186 477 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 173 474 - -
Spst3g01186 477 CDD bHLH_AtAMS_like 293 364 - -
Spst3g01186 477 Pfam Helix-loop-helix DNA-binding domain 297 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01186 Spst-Chr3 15343416 15346522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01186 99 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.066 3.24e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g01186 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01186 - - var:108344591 723.776