Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01178 ATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTGACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACCCTCATGGTGAGACCTGATCAGAAATTAAATAATGTAGCATCACCATTACCATGTGTAGCACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACCAGCAGTTTCCCTACCACAAATAATGATGACTATCTTTTAGATTATTCATCCTCACCTTTTCTTCAACCCCAGAGGCCAAATGTCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAACGACAGAAGTTTCTTCATCCATATGGATTCGCCAATAATTCTGGTTCTTTCAACTAA 477 0.4256 MKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLMVRPDQKLNNVASPLPCVAQCRPNQAIAFADTTTLTTTTSSFPTTNNDDYLLDYSSSPFLQPQRPNVFFEYNGGQIWEVDQRQKFLHPYGFANNSGSFN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01178 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 48 IPR036638 GO:0046983
Spst3g01178 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 31 IPR011598 GO:0046983
Spst3g01178 158 Gene3D - 1 49 IPR036638 GO:0046983
Spst3g01178 158 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 80 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01178 Spst-Chr3 15282349 15283684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01178 1 64 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 68.750 1.90e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01178 - - vun:114179333 278.87