Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01171 ATGTACCCTCATTTCAAGTTCAAAAGTCTCAACTTCTTTTCCTTCCTTTCTTTGGTTGTTGAATTTAAGAGTCCAAAGTTTGAAAAGCATATGGAAAAGCTGAATTTTGTCAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAACTTGTTTTCCAATACCTGAAGTGTAAGGTCTTCTCCTATCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGCATGATCCTTGGGATTTACCAGGGAATTGTGATCCACAAGAGAGGTATTTTTTCAGTCCAAAGGAAGCAAAGTATCGAAATGGTAATCGCATGAACAGAACAACAAAGTGTGGATATTGGAAGGCAACAGGTTCAGACAAGAGGATATCATCGTCTTCAACTGCGTGTAATGGTATCGTGGGGATAAGAAAAACACTGATTTTTTATGAAGGAAAATCTCCAAAAGGCTCCAGAACTGACTGGGTCTTGCATGAATATCGTCTTGTTAATGCAGAAACTCGTGCTTGCACTTCATCCCATAACTACGTAAACGAGATTGGAGATTGGGTTTTGTGTCGCTTATCGATGAAGAAAAGAAGTATAGAAAATGATGGTGATGAAAAGCAAAGAGTTGAAAGAGGTCAAAGATTAATGTTTGATTTCATGATGGTGGGAAAGAAGACCCATTCTTCTACATCCTCATCGTGTTCAAGTTCCAGTAACTTCCTCGAAGTCTCTTCAAATGCTTCGGATCATGAAGAAACAAATGGTGGCTATGCCTATTTTTAA 798 0.3897 MYPHFKFKSLNFFSFLSLVVEFKSPKFEKHMEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKHDPWDLPGNCDPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSSTACNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLVNAETRACTSSHNYVNEIGDWVLCRLSMKKRSIENDGDEKQRVERGQRLMFDFMMVGKKTHSSTSSSCSSSSNFLEVSSNASDHEETNGGYAYF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01171 265 SUPERFAMILY NAC domain 39 200 IPR036093 GO:0003677|GO:0006355
Spst3g01171 265 PANTHER NAC TRANSCRIPTION FACTOR 56 44 236 - -
Spst3g01171 265 ProSiteProfiles NAC domain profile. 44 200 IPR003441 GO:0003677|GO:0006355
Spst3g01171 265 Pfam No apical meristem (NAM) protein 45 171 IPR003441 GO:0003677|GO:0006355
Spst3g01171 265 Gene3D NAC domain 53 205 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01171 Spst-Chr3 15252718 15253938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01171 31 203 NAC Transcription Factor Family AT5G13180 61.272 3.68e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g01171 NAM 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01171 - - gmx:100812015 399.823