Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01139 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAAGTAAGGGGGAATTTTCGGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTGGCACAGAATCAGTATTGACCAAGTCCAAAGATGCTGTTGGAGTCTCCAAAATGACATCCTCATCTTCAGGTGGGTCATCTAAGAGAGCTCGTGCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTCGATGGGTGCCACTCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAAGTCACAATTGGAGGACACAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAACCCCAACCAGAACCTCTAACACGCTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCGTCCACTACTGTAATGAATCCTACATGGGGTGGAATTGTTGCTTCTGGTGATGTTAGGGTTCATGGGCACAACCAACAGCACCAGCAAAGTGACCTTTTTCTTGGATCTTCTCCAACCGGTTATAAAGAAGGGAAGCAATTGGCCTTCATGCAAGGTGACCACACCCTGAACAACCAAAGCCCACATCTAGCAGGTGGTTCCGTGGGCCAGGCCCAGGTATTTCTGAGGACCGGCCCGTATTCCGAAGGCGGTGGGCTGAGGTGCAAAATGTTGTGCGATAGCCTTACAGGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCCAATGGTGAACCATCATCATTCGCCTCTTATGCAGCCATTGGGCCTGAGCCTGCACGATAACAGTTTGGGGCCCGTGGACCCAGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCACAGGGGAATGAAGCCCCTCCACTGTTTCCCTTTCAATGGGAATAG 1155 0.497 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRSKGEFSVDLKLGQVGNSGTESVLTKSKDAVGVSKMTSSSSGGSSKRARALSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDVRVHGHNQQHQQSDLFLGSSPTGYKEGKQLAFMQGDHTLNNQSPHLAGGSVGQAQVFLRTGPYSEGGGLRCKMLCDSLTGSVHDSSRALSLLSSPQPHSPGNGLSPMVNHHHSPLMQPLGLSLHDNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEAPPLFPFQWE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01139 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 372 IPR044817 GO:0003677
Spst3g01139 384 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Spst3g01139 384 Pfam SBP domain 95 168 IPR004333 GO:0003677
Spst3g01139 384 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Spst3g01139 384 FunFam Squamosa promoter-binding-like protein 14 86 156 - -
Spst3g01139 384 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Spst3g01139 384 MobiDBLite consensus disorder prediction 159 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01139 Spst-Chr3 14706117 14708681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01139 1 384 SBP-box Gene Family AT5G50670 44.724 2.52e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst3g01139 SBP 5.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01139 - - gmx:100806507 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01139 3 14706117 14708681 Spst3g01139 3 14706117 14708681 ECH
Spst3g01139 3 14706117 14708681 Spst9g02141 9 46012052 46015062 PCT