Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01130 ATGCCTCAGGGAAGCCTTGAAGTTTTTCTTGTTAATGCCAAAGGCCTTGAGAACACCGATTATCTGTCAGCTAAAATGGACCCTTATGTGATCCTCATGTGTCGCACTCAGGAGCAAAAAAGCAGTGTTGCAGCAGGAAAAGGAAGTAATCCAGAATGGAACGAAAATTTTGTATTCAACGTTTCTGAAGGCGTTAACGATCTCAGGTTGAAGATCATGGACAGTGATTCCATGACTGCTGATGATCTCGTGGGAGAAGTTACGATTCCGCTGGATGCAGTGTTCTGCGAAGGCAATATCTCACCCACTTCATTCAATGTTGTGAAAGATAACCGTTATTGTGGAGAGATTAGAATTGGCCTTAATTTTAAGCATCAGGATCGCAGGGAACGCAGTGTAGAGGAAGATTTTGGGGGATGGAAGGAGTCTGCTTACAGAAACTAA 444 0.4347 MPQGSLEVFLVNAKGLENTDYLSAKMDPYVILMCRTQEQKSSVAAGKGSNPEWNENFVFNVSEGVNDLRLKIMDSDSMTADDLVGEVTIPLDAVFCEGNISPTSFNVVKDNRYCGEIRIGLNFKHQDRRERSVEEDFGGWKESAYRN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01130 147 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 126 IPR035892 -
Spst3g01130 147 PANTHER C2 DOMAIN-CONTAINING 1 131 - -
Spst3g01130 147 Pfam C2 domain 4 103 IPR000008 -
Spst3g01130 147 SMART C2_3c 5 103 IPR000008 -
Spst3g01130 147 Gene3D C2 domain 2 125 IPR035892 -
Spst3g01130 147 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01130 Spst-Chr3 14639407 14640731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01130 4 127 C2H2 Transcription Factor Family AT4G21160 29.032 7.51e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01130 - - gmx:100806391 240.35