Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01126 ATGTGGGGTTGGATGCTTGGTGAAGGGCGTAGGGTGGTGTGCGAGGTGGCGTGCACCCGCAACTGGGTGGCGCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCGGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAATTCGCCAGGGACAAACAGAAGAGACTCATCGAACAAGAGAAACAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGCTCCGCCCTCTCCCCCGATCACCGCTCCGCCGCCGCTGCCACCCACCGCCCCCTCTCACCTAACGACCACGTCAAAGCCCTCGCCGACCGCTTCCTCAAAGACGGCGCCCAAGATCTCTGGAACACCCGCGACGGTCCCCTGACTCCGAACCCAACACCGACCCAAAACCTTCATTTCCGCCCCAAACATTCTAGGGGATACCGTTCGGTTCCCGAGGTTGGGAACAAACGTGTTGGGGCCCACAAGTATAGGTTTTGGCGGAAGGGTAGTGATGATTCTTCTTCCGATGAGAGCGAGAGTGAGAATGAGAGTGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCCTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGGGTTGTACCTAAGATATCTGAAGAGGTTGAGTTTATTAGACAAGAGCTTAATAAGCGGAAGTTGAAACAGATTGAGGAGCAAGAGACTAAGGAACAACACAGCAATGAAAGCATTCTAAGCAACACAAGATTTGATGAGTGCGGTATATCACCGAATACTGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATTTGACCCGGGTACAAGAGGCTAGCCTCTCTATTTGCCTTGAGGGTCTGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTGCGAGTAGCAATAAGTCTGAACGGGTTGCCCCAATATATGTTCTTGTTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGTAGCAAAAGTTTTACTGAAATATCACGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCGTACGATTTAAAGTTGACCTAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAGTAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCGAAGGAGGTACGTCGCATATCCCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGCGTAGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCAGTGCTCCTCAGGAGTCACATTTTCAATTAGTGCATCATATTCTGAGGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCCAGAAAGCCTCAGCTCTATCGAACTCGAATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCGCGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTGGGAATTCCTTCCGACCGGGAACAATACATACACCGTCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGAAATGCGTATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATTAAGGATCTACCTCTACAGGAATTTCCCTTGCCAGACATAGATCCACAGGCAAAACTTAAGATTGAGAATTCAATGGCAAAAATTGATAATGACATCAAAGAAGGCGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGAGAAATTGGGAGGGAAAAGACCACTGTAGTTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTTTCGGTGCCCAATTGTGGATTTGTTGCTGGATGACATTTGAGCTGTTTCGCACTGATTTTCAATTGGAAGATTTGTCATACATGGGACTTTGTGTACTAACTATTGATGGAAGTTCAATTTTCAAGGCTCTCACTTCTGATCTTAATGACTATACTGATGCTGAGCCAACTTTCAAGTTGCTGCAAGGCCGGAACCTAGCACAGAAAAGGACCATCCAATTTATGGAGTTTCTCTACGTGATGTTCCAGGGGGTCCGAACCCCCTTCATAACTGATCAACCATCTAGCAATCTGCTGCTTGTCAAGTTATACAAGATTTTGCAGGTTCTAGTGTAA 2472 0.4555 MWGWMLGEGRRVVCEVACTRNWVALRHMGGGPRTFPGGVNKWKWKRMHEKFARDKQKRLIEQEKQLYEARIRSHIRSALSPDHRSAAAATHRPLSPNDHVKALADRFLKDGAQDLWNTRDGPLTPNPTPTQNLHFRPKHSRGYRSVPEVGNKRVGAHKYRFWRKGSDDSSSDESESENESELSLKTGSSASLGEYDVKREKRVVPKISEEVEFIRQELNKRKLKQIEEQETKEQHSNESILSNTRFDECGISPNTVKALSSAGYVHLTRVQEASLSICLEGLDALVKAKTGTGKSVAFLLPAIETVLKAASSNKSERVAPIYVLVLCPTRELASQIAAVAKVLLKYHDGIGVQTLVGGVRFKVDLKRLESDPCQILVATPGRLLDHIESKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKVKQSYLSAPQESHFQLVHHILREHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGKCVLLIAPWEEYFLDEIKDLPLQEFPLPDIDPQAKLKIENSMAKIDNDIKEGAYHAWLGYYNSIREIGREKTTVVELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRFGAQLWICCWMTFELFRTDFQLEDLSYMGLCVLTIDGSSIFKALTSDLNDYTDAEPTFKLLQGRNLAQKRTIQFMEFLYVMFQGVRTPFITDQPSSNLLLVKLYKILQVLV 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01126 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 642 IPR001650 -
Spst3g01126 823 MobiDBLite consensus disorder prediction 114 150 - -
Spst3g01126 823 SMART helicmild6 516 597 IPR001650 -
Spst3g01126 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 436 IPR027417 -
Spst3g01126 823 MobiDBLite consensus disorder prediction 163 187 - -
Spst3g01126 823 CDD SF2_C_DEAD 473 606 - -
Spst3g01126 823 PANTHER RNA HELICASE 201 642 - -
Spst3g01126 823 Pfam DEAD/DEAH box helicase 268 446 IPR011545 GO:0003676|GO:0005524
Spst3g01126 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 614 IPR027417 -
Spst3g01126 823 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 244 272 IPR014014 GO:0003724
Spst3g01126 823 Gene3D - 468 692 IPR027417 -
Spst3g01126 823 Pfam Helicase conserved C-terminal domain 491 595 IPR001650 -
Spst3g01126 823 Gene3D - 210 459 IPR027417 -
Spst3g01126 823 SMART ultradead3 263 474 IPR014001 -
Spst3g01126 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 458 IPR014001 -
Spst3g01126 823 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01126 Spst-Chr3 14611872 14619870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01126 244 623 Eukaryotic Initiation Factors Gene Family AT3G19760 26.448 5.44e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01126 - - vun:114177584 1268.83