Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01109 ATGGATGGGAGAGAGGTTATGGCATTTTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGCTCCGGACCACTTAGTGGGGGAGAGGGGTTCCAAGCAGCCCCTGGGTTTAGACCTTTGTCAAACACTGACATTCATGCTGAGTCAAATGCAAGGATTCAAGGGGGTGGTTCTGTAGGGTCTAGCTCCACATTTTCCGTGGAGCCTCCTCATCGTGCCAATTTTAACCATGGCATTGGCATTGGCATTGGGGCACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGACCTCGAAAATATGGTCCTGATGGAACAGTTTCTTTGAAATTGTCTCCAATGTCTGCCCCCCCTAACTCCACCCAGGGTGAAATTGCAACCTCCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCAGGATCTGGAAGGAAGCAACAGTTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGGTTAGCCTTTTCACCTCATGTTGTCACTATTGGAGTTGGGGAGGACATCGTGGCCAAGTTATTGTTATTATCGCAGCAGAGACCAAGGGCTCTTTGCATCTTGTCAGGTACTGGGACAGTTTCTTCAGTCACTCTTCGACAGCCCGCATCTACCAATGCCAGTTTAACTTTTGAGGGAAGATTCCAAATACTATGCTTGTCTGGTTCTTACTTAGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGTATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCCGGAAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGTGCCAAGGCGAAGCCTAAACAAGGGCTTACAATCACAGATGAAAGTTCTGAGCAATCTCAGCATAATGACAAGTTAGCTTCTCCAGCCAGTGCTCCAACTGGTCAAAATCAAAATTACCTCCCTTCAGCACACATTTGGTCTGGATCACGACCAGCGGAGCTGAAAAACACACAAACTCATACTGGCATCGACTTGACTCGTGGGTTTGCACCAACACATGCTGAAACAAATGATTTATTCGGGGATTAA 1107 0.4761 MDGREVMAFSGGSASYYMHRGGVGGSGSGPLSGGEGFQAAPGFRPLSNTDIHAESNARIQGGGSVGSSSTFSVEPPHRANFNHGIGIGIGAPSSEPVKKKRGRPRKYGPDGTVSLKLSPMSAPPNSTQGEIATSLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCILSGTGTVSSVTLRQPASTNASLTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGAKAKPKQGLTITDESSEQSQHNDKLASPASAPTGQNQNYLPSAHIWSGSRPAELKNTQTHTGIDLTRGFAPTHAETNDLFGD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01109 368 ProSiteProfiles PPC domain profile profile. 162 304 IPR005175 -
Spst3g01109 368 MobiDBLite consensus disorder prediction 295 329 - -
Spst3g01109 368 CDD DUF296 170 282 IPR005175 -
Spst3g01109 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 292 - -
Spst3g01109 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 70 322 IPR039605 GO:0003680
Spst3g01109 368 Gene3D - 170 305 - -
Spst3g01109 368 MobiDBLite consensus disorder prediction 348 368 - -
Spst3g01109 368 MobiDBLite consensus disorder prediction 118 135 - -
Spst3g01109 368 MobiDBLite consensus disorder prediction 293 329 - -
Spst3g01109 368 MobiDBLite consensus disorder prediction 49 76 - -
Spst3g01109 368 MobiDBLite consensus disorder prediction 26 152 - -
Spst3g01109 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01109 Spst-Chr3 14512836 14515908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01109 1 354 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.871 4.02e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01109 - - gmx:100798706 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01109 3 14512836 14515908 Spst3g01109 3 14512836 14515908 ECH
Spst2g00308 2 2385110 2388868 Spst3g01109 3 14512836 14515908 PCT