Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01096 ATGGTGCCAGAGAACATGAAGAAGCAACTTGCTTTGGCTGTGAGAAGCATCCAATGGAGCTATGCAATCCTCTGGACTGATTCAGCCACCCAACCCGGGGTGTTGAGATGGGGAGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGCTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCTCTCAAAACTGCAGAAATCAGCCCACAAAGCAAAAGGCCGTCGGCAGCACTATCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAGGGGTTGCCAGGAAGAACTCTGGCAAAGGGTCAACCCATTTGGTTGAACAATGCCCATTCCGCTGATTGTAAAGTTTTTAGTCGTTCTCTACTGGCTAAGAGTGCATCCATTGAGACGGTTGTGTGTTTTCCGGTTATGGAAGGAGTTATTGAGCTTGGTACTACTGAACAAGTCTCAGAAGATTTCAGTCTCATTGAGCGAATAAAAACTTCTTTCTTGAATAGTCTGCATGTCAATGTTCCTAATAAGTCTGGAGTATTGAAATCAAGGGACCAGGAAGATCTTGCTTATGTAGCATTTGATCATAATGCTAATAATGTTGAATCAATTCCAGAAATTGGTTATGACATAGCCAACGCAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCACTGGATGAAACATTCATGGTTGAAAGGATAACCAGTGGAACTTCGCAAGTCCAGAGCTGGCAAGTTATGGATGATGAGTTGAGTAACTGTGTCCATAACTCCATGAATTCCAGCGATTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTGCTTCTTCACCCAAGTGTAACAACCCTTCTGACCCTCGTGCCCGAGATCTTCAAAAGTGCAACAACCCAAAAATGACCCTAGTGGATCCTCGAAGCGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTTTAAAAAACTCTGACCAGTTACTCATAAGAATGCATTCACAAAAATTTCATCAGGAATCGAGCTTTGTTAGTTGGAGGAAAGGAGGGACAATGGATTGCCAATGGCCAAGATCAGGAACTTCACAAAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAAAATGACTATAAAGAGGGAATGAGACTAGAGGCTGATGAAATTGGCATGAACCATGTTATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACTCTTAGGTCAATGGTCCCTTCAATCACTAAGGATGACAAAGTTTCAATACTTGACGATGCAATTGAATACCTTAGAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCAAAAAGGGATGACAAATATAGAGCCTGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAGCAATAATGGCAAGAAACCAGTGGTAAAAAAGAGAAAGGTTTGTGGTGTAGATGAGACAGGACGAGAGATCAATTCAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTACTGTGAGTGCCGGTGACAATGAACTTGTGATCGAAATGAAGTGCCCTTCAAGATCAGGAAGGCTACTGGAAATTATGGAAGCAGTTAATAGTTTCAACATAGATTTTAATTCAGTTCAGTCAACAGAATCTGATGGGAATCTTCATCTGACCATTAAATCTGTGTTCACAGGAGCAACCATTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCATCCAAGTTCTGA 1887 0.4134 MVPENMKKQLALAVRSIQWSYAILWTDSATQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEISPQSKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQPIWLNNAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEQVSEDFSLIERIKTSFLNSLHVNVPNKSGVLKSRDQEDLAYVAFDHNANNVESIPEIGYDIANATSPDGSSNAFQANQPLDETFMVERITSGTSQVQSWQVMDDELSNCVHNSMNSSDCISQTFASPENIASSPKCNNPSDPRARDLQKCNNPKMTLVDPRSDDWHYQRVLSDLLKNSDQLLIRMHSQKFHQESSFVSWRKGGTMDCQWPRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLEADEIGMNHVMSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLERRIKELEAQKGMTNIEPGTRRSPQDMVERTSDHYFSKSNNGKKPVVKKRKVCGVDETGREINSDALKGSYANDVTVSAGDNELVIEMKCPSRSGRLLEIMEAVNSFNIDFNSVQSTESDGNLHLTIKSVFTGATIATTKRIKQALQKVASKF 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01096 628 SMART finulus 432 481 IPR011598 GO:0046983
Spst3g01096 628 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 428 493 IPR036638 GO:0046983
Spst3g01096 628 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Spst3g01096 628 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 426 475 IPR011598 GO:0046983
Spst3g01096 628 ProSiteProfiles ACT domain profile. 560 628 IPR002912 -
Spst3g01096 628 Pfam Helix-loop-helix DNA-binding domain 430 476 IPR011598 GO:0046983
Spst3g01096 628 Coils Coil 465 492 - -
Spst3g01096 628 PANTHER TRANSCRIPTION FACTOR TT8 2 626 - -
Spst3g01096 628 Gene3D - 425 490 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01096 Spst-Chr3 14393377 14396703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01096 2 625 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.177 1.24e-178 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g01096 bHLH-MYC_N 6.5e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01096 - - gmx:100808167 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01096 3 14393377 14396703 Spst3g01096 3 14393377 14396703 ECH