Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g01080 | ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCATCAGAGGAGCATGTTCCTCTATCTTCTCACCAGGGTGCCGCTTCTACTTTCTCTGGCCGACTCTTGGTTGATACAAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCGCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCTCTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGAATAATACATCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTACCTGGAGACAATCATGGGACCCCAGTTAAGTTGGATGAACTGAAGGAATCAGAGAACAAAGTTCAGACTGATATAGAGCTAGATTCTGCTAAGGGTTCTGATATTGAACTTGCAAAGTCAGGAAAACCTGTAGATTTAGTAGAGGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAGTGCGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCCGTATGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA | 639 | 0.4304 | MGGCCCCCSSKETVLSAPPAYYYYPRASEEHVPLSSHQGAASTFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTSQTPPAAQEIRSDKNNTSLHSTNSNAIQEPVPGDNHGTPVKLDELKESENKVQTDIELDSAKGSDIELAKSGKPVDLVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g01080 | 212 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 38 | 208 | - | - | |
| Spst3g01080 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 161 | 202 | IPR001841 | - | |
| Spst3g01080 | 212 | MobiDBLite | consensus disorder prediction | 79 | 108 | - | - | |
| Spst3g01080 | 212 | Pfam | Ring finger domain | 159 | 201 | IPR001841 | - | |
| Spst3g01080 | 212 | SUPERFAMILY | RING/U-box | 155 | 208 | - | - | |
| Spst3g01080 | 212 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 138 | 206 | - | - | |
| Spst3g01080 | 212 | MobiDBLite | consensus disorder prediction | 79 | 112 | - | - | |
| Spst3g01080 | 212 | CDD | RING-H2_AIRP1-like | 157 | 205 | - | - | |
| Spst3g01080 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 207 | IPR013083 | - | |
| Spst3g01080 | 212 | SMART | ring_2 | 161 | 201 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g01080 | Spst-Chr3 | 14229540 | 14231075 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst3g01080 | 1 | 208 | C3H Transcription Factor Family | AT5G41350 | 54.976 | 3.96e-74 | 221 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst3g01080 | - | - | gmx:100816369 | 411.764 |