Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01078 ATGTCTTCTGATCTCCACTCTTACGGCACCACTTTCCACACACATTCAAACTCAGACTTTCTCTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCCGATTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCTCAAGACAATTCCAATTCTCTCCCTTCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTCAGCCTTTACCATGCCAACCGCGTGCAGCCTCTGTCAAATGGCCAAAACTTGGCGAACGAGTTTGGAAGTTTCTCAGTTCTTGATGGGTCTGAAGTGAAGAGTGAGGAATGCCAATTGGGTGTTGATTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTCTCCAAGTACATGCAGAGAAGCTTCAGCAGCAACTCCTTTGAAGGAAAACCTGGTTTTCTGTCACAACCTTTCGGCGATGCTCTTGTGGACTCTCCAAAATTTCAAAGGCATGACTTGAGTTCCCCTGAAGACACTCTCTTTAGCGGACAGATGAGAAGGGTTTGCAGCACAGGAGATTTGCAGAACATGAAGGAAAATCACATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCGAACTTCAAAGTGGGACGTTACAGTGCGGAAGAGAGAAAAGAAAGAATCTCCAAATACAGAGCCAAGAGAACCCTGAGGAATTTCAACAAGACCATTAAGTATGCATGCCGCAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAACCCATCGACACTCCCAAGGCTTCATGTTCAACACGAGACGAAGATGATGTTGATTTCTGGATTGAAGAATTGCGATTGCATGAAGAGCAAGAGGATGTAACAGTGGGAGCAGAACAATATTTGAGAAGCTATGGAGCAACCCAGTTTCAGTATGGTGGCTTTTGA 981 0.4628 MSSDLHSYGTTFHTHSNSDFLSSDGVGDLPFLSDSFPFFPNSPSNVAQDNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGQNLANEFGSFSVLDGSEVKSEECQLGVDCVYAQQLLPHSYSGAENFSKYMQRSFSSNSFEGKPGFLSQPFGDALVDSPKFQRHDLSSPEDTLFSGQMRRVCSTGDLQNMKENHMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTLRNFNKTIKYACRKTLADNRPRIRGRFARNDEPIDTPKASCSTRDEDDVDFWIEELRLHEEQEDVTVGAEQYLRSYGATQFQYGGF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01078 326 Pfam CCT motif 228 270 IPR010402 GO:0005515
Spst3g01078 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 290 IPR045281 GO:0009909
Spst3g01078 326 ProSiteProfiles CCT domain profile. 228 270 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01078 Spst-Chr3 14178737 14180542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01078 224 272 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 4.48e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g01078 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01078 - - gmx:102665661 450.669