Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01069 ATGGGTCACCATTCCTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCTGATATAAGAAGAGGCAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGTCACTTGCCAGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCAGTGTCTTCAACCACTATTGCACAAAGCATCGATCACAATTCTTCCCAGTTCAACTACAATTCCAATCTACTAGGCCACTTTTCTTCCAACCTAGATAATCTACAAACAAAACCACAAGTTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTTGACACAACTTCACTAGAAGGCACAGCAACAGACTGCAATAGTGTGCGAGCAGAACATTTTCAAGATGCTGTAGGTTTGAGCACTGAAACATGGAACCTGAGCCACCATCATGTTCAGACGACACTGCCTCCTCTCACAGTGACTGTAGGCTTGGACACCACAAATTATTTGCCACCATTGATCGAGAACGTGGACAACATGGTCCCAGTTGAGGTACAAACATGTACCATGGACGACCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGTTAAATGAATGGGTGGAAACGCAGCAACAATGTCCCAACTTTCTTTTCTGGGACAGTATTGGTGGGGAAGAACTAGCACCAAATTCAGCAAATGTGGACGCTAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 933 0.4319 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNSSQFNYNSNLLGHFSSNLDNLQTKPQVQETLFSSTCPLFMFDTTSLEGTATDCNSVRAEHFQDAVGLSTETWNLSHHHVQTTLPPLTVTVGLDTTNYLPPLIENVDNMVPVEVQTCTMDDQGDIALECLQRQGLNEWVETQQQCPNFLFWDSIGGEELAPNSANVDANTLSPFPSSL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01069 310 Gene3D - 68 140 - -
Spst3g01069 310 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst3g01069 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst3g01069 310 CDD SANT 69 112 IPR001005 -
Spst3g01069 310 FunFam MYB transcription factor 6 66 - -
Spst3g01069 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst3g01069 310 CDD SANT 17 61 IPR001005 -
Spst3g01069 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst3g01069 310 SMART sant 66 114 IPR001005 -
Spst3g01069 310 SMART sant 13 63 IPR001005 -
Spst3g01069 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst3g01069 310 Gene3D - 6 66 - -
Spst3g01069 310 FunFam Transcription factor MYB26 68 137 - -
Spst3g01069 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst3g01069 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst3g01069 310 PANTHER MYB DOMAIN PROTEIN 55 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01069 Spst-Chr3 14062679 14065239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01069 1 286 MYB Transcription Factor Family AT1G63910 52.339 1.34e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g01069 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01069 K09422 K02947 gmx:100803556 505.368