Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01053 ATGGAACAGAAAAGCATCCTGATATCGGCTTTGGGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGGCCAAGCGTTGGCAAATGGGGAGCCAACACTTTTCCCTCAAACGCTATTACTGCTGAGAAGATGGAGCAGGAAATGCTGAGACAAGTTGTTGATGGAAGAGAGAGCAACGTCACTTTTGAGAAATTCCCTTATTACCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCGTATGTTCATTTAAAGCATGCTGAGGTTTCTAAATATACACGTAATCTAGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGGCCAGCAGAACTTTACCAGCAGATGCTAGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAACCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAAGAACCTAAAGGAAAAATGCACAGGCCTAGCAGTGGACTGGACCTCCAATCAATGGGGGCTGAAGCATCTTGTAATCCTCCACCACTGCGTAGGAATGCTTCTTCCTCTTCAAATATAAGTGGCCTTGCTTCGCAAACCAATCCTACAAATTCAGGTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAAAAGCTTCTAATACAGTCACTTTACAAGGTTCTGGTTTTCGTGTCAAAAACATATCCCATTGTGCTATATTTGCGGGATGTTGATAAGCTGTTGTATAAATCGCAAAGGATATATAACTTGTTCCAGAAAATGTTGAAGAAACTATCCGGATCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGTAATGACTTTGAAGAGGTGAATGAGAAGATTGATGCACTCTTCCCATACACCATAGAAATCAGGCCCCCCGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAAAATCATATCATGGAAGTCCTTGCAGCAAATGATCTCGATTGTGATGACCTAGATTCCATATGTGTGGAAGACACAATGGTTCTTAGTAACTATATAGAGGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACCCCGAATACAGAAATGGAAAGCTCGTTATTTCTTCCAACAGTTTGTCCCATGCATTGAGTATATTCCACAAAGGGAAATCCAGTAGAGGAGATACATTAAAATTGGAAGATCAAACTGTGAAATCTGAGAAGCAAAGAGAGGAAGTAACTGTTATGAAATCAGAAGCAAAGTCTGAAAATGCTGCTCCTGTGAAAAAGGCTGAAGCGGAAATACCAACTTCGGTGGGAAAGGGAGATGGTGAAAAATCAGCTCCTACACCCAAAGCCCCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATAGATGTCACATTCTCTGACATTGGTGCCTTAGATGAGACCAAAGAATCTCTTCAAGAACTAGTAATGCTTCCACTACGAAGGCCGGATCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTTTGGGCCTCCTGGTACTGGGAAGACCATGCTAGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTTTCCATGTCTACCATTACTTCGAAATGGTTTGGTGAAGATGAAAAGAATGTTCGCGCTTTATTCACACTTGCAGCCAAGGTCTCCCCAACTATTATATTCGTGGATGAGGTTGATAGCATGCTTGGACAACGTACCAGAGTTGGGGAGCACGAAGCCATGAGGAAAATTAAGAATGAATTTATGAGCCATTGGGATGGACTTTTAACAAAGCAAGGGGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTTGGACTACCGTCTGTGGACAGCAGGGAAAAGATTTTGAAGACTCTTCTATCAAAAGAGAAGGTGGACAACGAGCTTGATTTTAAGGAACTTGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGTACAACTGCTGCTTATCGGCCTGTTAGAGAACTAATTCAGCAAGAGAGGCTAAAGAGTCTGGATAAAAAGCAGAAAGCTGCCGAAGGACAGAATGAAAATGTCCAATATAGTCAAGCTGGACCATCTATTGTAGGAACTACTCAAGATGCTCCTCTATATGGAAAAGAGGTAGTTAGGCAAGAAAGAATCATCACCCTTAGGCCTTTGAATATGCAGGATTTCAGAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGAGCTGGAATGACTGAGTTGAAACGGTGGAATGATTTGTACGGAGAAGGGGGTTCAAGGAAGCAGCAGCAGTTGTCTTACTTCCTATGA 2565 0.4226 MEQKSILISALGVGVGVGVGIGLASGPSVGKWGANTFPSNAITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKEPSFKRSTSESTLERLSDLFGSFSIFSQREEPKGKMHRPSSGLDLQSMGAEASCNPPPLRRNASSSSNISGLASQTNPTNSGPLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYKSQRIYNLFQKMLKKLSGSILILGSRVIDCGNDFEEVNEKIDALFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISYHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKSSRGDTLKLEDQTVKSEKQREEVTVMKSEAKSENAAPVKKAEAEIPTSVGKGDGEKSAPTPKAPEVPPDNEFEKRIRPEVIPANEIDVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVDSREKILKTLLSKEKVDNELDFKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAEGQNENVQYSQAGPSIVGTTQDAPLYGKEVVRQERIITLRPLNMQDFREAKNQVAASFAAEGAGMTELKRWNDLYGEGGSRKQQQLSYFL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01053 854 SMART AAA_5 558 695 IPR003593 GO:0016887
Spst3g01053 854 MobiDBLite consensus disorder prediction 211 238 - -
Spst3g01053 854 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 853 - -
Spst3g01053 854 MobiDBLite consensus disorder prediction 437 472 - -
Spst3g01053 854 MobiDBLite consensus disorder prediction 759 779 - -
Spst3g01053 854 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Spst3g01053 854 Pfam AAA+ lid domain 716 753 IPR041569 -
Spst3g01053 854 Gene3D - 694 769 - -
Spst3g01053 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 759 IPR027417 -
Spst3g01053 854 Gene3D - 521 693 IPR027417 -
Spst3g01053 854 MobiDBLite consensus disorder prediction 183 238 - -
Spst3g01053 854 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Spst3g01053 854 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Spst3g01053 854 MobiDBLite consensus disorder prediction 437 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01053 Spst-Chr3 13874156 13879226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01053 522 769 Calmodulin-binding Proteins AT3G56690 38.645 2.55e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01053 - - gmx:100807464 1480.69