Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01033 ATGGACTTTCTACCCATTTTCTATTCCATATCCCTTTTGTGTTTGGTTGTGTGGCAAGGAAGTGGTGAGCCTGTTGAAGATAAGGAGGCGTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTGAATTGGAATGAGAGTTCCCCGATGTGTGCTTCTTGGACTGGTGTGACTTGCAATGAAGACCAGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGCCGCCTCTCAGCACTGCAAACTTTGAGTCTCAGATCCAATGTGATAACTGGGCAGTTCCCTTCTGATTTTTCCAATCTAAGGAACTTGTCTTTCCTCTATCTTCAGTTCAACAACTTGTCTGGGCTTTTACCTGATTTCTCGGCCTGGCAGAACCTCACTGTTGTCAATTTGTCCAATAACCATTTCAATGGCAGCATTCCTGTCTCCCTTAACAACTTGCCTCAGCTTGCTGGTTTGAACCTTGCGAACAACTCTCTTTCTGGGGAAATTCCTGACCTCAACTTGTCAAGGTTGCAGGTGCTGAATCTGTCCAACAACAACTTCCAGGGAAGTGTGCCCAAATCCCTGTTGAGGTTTCCTGAGTCTTCATTCTCTGGGAATAATATTTCCTTTGGAAGTTTTCCTACAGTTTCTCCCGCACCTCAACCGGCTTATGAGTCGTCTTTGAAGTCTAGGAGGCATGGAAGGCTCAGTGAAGCGGCACTGTTGGGAGTGGTTGTTGCTGCTGGTATTTTAGGCCTCGTGGCTTTTGTTTCTTTGACTTTTGTGTGCTGCTCAAGAAGAGGTGATGAGGATGAGGAGACCTTCAGTGGGAAGTTGCACAAGGGAGAAATGTCGCCTGAGAAAGCAGTCTCGAGGAACCAGGACGCAAATAATAAGCTAGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTAGAGGATTTGCTGAGGGCTTCTGCTGAGGTGCTAGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTAGAGGATGCAACCACCGTTGTTGTGAAGAGGTTAAAGGAGGTAGCTGTTGGAAAGAAAGATTTTGAGCAGCATATGGAGATTGTAGGAAGTCTTAAGCATGAGAATGTGGTTGAGCTCAAGGCATACTATTATTCCAAAGATGAGAAACTCATGGTATACGATTACCACAGTCAGGGGAGCATAGCTTCCATTCTGCATGGCAAAAGAGGAGAGGAGAGGGTGCCTTTAGATTGGGACACGAGGCTGAAAATAGCCCTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAACGGTGGCAAGCTCGTACATGGAAACATCAAATCCTCAAACATTTTTCTCAACAACAAACAGTATGGATGTGTATCTGATCTTGGTCTGGCAACCATATCAAGCTCACTTGCCTTACCAATCTCACGAGCAGCCGGCTACCGGGCACCCGAAGTGACAGACACCAGAAAAGCAGCGCAGCCCTCAGATGTTTACAGTTTTGGTGTGGTGTTACTAGAGCTTCTGACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGCGCGAGGAGTGGACAGCTGAAGTGTTTGATCTAGAGCTGATGAGATATCCAAACATTGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAGAGGCCTAAGATGTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATGCAGACCTTTACTCATCATCTGGGAACCAAGCAGAACAACTTAAGTTATCTCAACGTGACAGTGGTAACTCTCCTTCCACTCCCTCCTACTTCCCAAGAGGAAGTGATTGA 1914 0.4603 MDFLPIFYSISLLCLVVWQGSGEPVEDKEALLDFVNKFPPSRPLNWNESSPMCASWTGVTCNEDQSRVIAIRLPGVGFHGTIPPDTISRLSALQTLSLRSNVITGQFPSDFSNLRNLSFLYLQFNNLSGLLPDFSAWQNLTVVNLSNNHFNGSIPVSLNNLPQLAGLNLANNSLSGEIPDLNLSRLQVLNLSNNNFQGSVPKSLLRFPESSFSGNNISFGSFPTVSPAPQPAYESSLKSRRHGRLSEAALLGVVVAAGILGLVAFVSLTFVCCSRRGDEDEETFSGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHGKRGEERVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNNKQYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDADLYSSSGNQAEQLKLSQRDSGNSPSTPSYFPRGSD 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01033 637 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01033 637 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Spst3g01033 637 PANTHER OS05G0588300 PROTEIN 6 606 - -
Spst3g01033 637 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Spst3g01033 637 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Spst3g01033 637 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
Spst3g01033 637 FunFam pollen receptor-like kinase 1 295 400 - -
Spst3g01033 637 Gene3D Ribonuclease Inhibitor 25 274 IPR032675 -
Spst3g01033 637 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 607 - -
Spst3g01033 637 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Spst3g01033 637 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Spst3g01033 637 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01033 637 MobiDBLite consensus disorder prediction 611 637 - -
Spst3g01033 637 SUPERFAMILY L domain-like 37 207 - -
Spst3g01033 637 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Spst3g01033 637 SMART LRR_typ_2 90 113 IPR003591 -
Spst3g01033 637 SMART LRR_typ_2 114 136 IPR003591 -
Spst3g01033 637 SMART LRR_typ_2 183 207 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01033 Spst-Chr3 13666781 13669750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01033 16 630 Receptor kinase-like Gene Family AT4G23740 64.800 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst3g01033 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01033 - - gmx:100804799 1152.5