Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01032 ATGGCTTCATCAACCATCAAGCAAACACAACACCTTAAACGCACCAAACTCTTCATGGAAGAAGACACCCTTCTGAAGAAGAACCATCACTATCCCAAGCTCGTCCGAATACGAGTCACCGACGCCGACGCCACCGACTCCTCCAGCGACGAGGACCAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCAAGGCGCCGGCGTTAAAGTTTCCAGGAAAAGAAGGGCGAAGTCAGGCGGCACTCCGCCGAGTCGGCGGCGGATGGGGGCGAGGAAGTTCCGCGGAGTGAGACAGCGACCGTGGGGTAAGTGGGCGGCGGAGATAAGGGACCCGTCTCGTCGCGTGCGGCTCTGGCTGGGAACCTACGACACCGCGGAGGAAGCCGCCATTGTGTACGACAATGCCGCCATTCAGCTGCGCGGCGCAGACGCGCTCACCAATTTCATAACGCCGCCGGCGGAGGGCAGAAAAACCGGTTACTTCTCCGGCGAGGAGTCTCGCAACGACGAGTTGCGTTCCCCCACTTCGGTTCTTAGGTGCTGTTCGGCGTCCGAGGAAGTTGAATCGGTTGCTGCAAACGACGTCTTTGGTCCCGCGAGCGAGTGCGAATATTCATGCGTTTCGGAGGATAGTAAGTTGAAACATGAGTCAGTGTTTGGTATTCCTGACGATGTAGTATTTAGATTTGAAAGCACGTTGGATACGTTTGACGAGTGTGCTAATAACGTGGCAGAGAGTAATGGCATATTCTTGGAGGACGAATTTGATTTCAGTGGAAGCTTTGTGAGTGAGAAGGATAATTTAGATTTGGGTTTTGGGTTTGGGTTTGGGTTTGGGTTTAAGAGTTGGCACAGAGAGTGTGATAATTTCCAGGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCACTTTGA 945 0.5365 MASSTIKQTQHLKRTKLFMEEDTLLKKNHHYPKLVRIRVTDADATDSSSDEDQPSVSSTRRRVKSFVNEITIQGAGVKVSRKRRAKSGGTPPSRRRMGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEGRKTGYFSGEESRNDELRSPTSVLRCCSASEEVESVAANDVFGPASECEYSCVSEDSKLKHESVFGIPDDVVFRFESTLDTFDECANNVAESNGIFLEDEFDFSGSFVSEKDNLDLGFGFGFGFGFKSWHRECDNFQDIGDLFVWDPLVAL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01032 314 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 MobiDBLite consensus disorder prediction 41 62 - -
Spst3g01032 314 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Spst3g01032 314 MobiDBLite consensus disorder prediction 77 102 - -
Spst3g01032 314 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Spst3g01032 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 216 - -
Spst3g01032 314 MobiDBLite consensus disorder prediction 79 102 - -
Spst3g01032 314 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Spst3g01032 314 FunFam Ethylene-responsive transcription factor 2 100 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01032 Spst-Chr3 13659244 13660188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01032 1 314 AP2-EREBP Transcription Factor Family AT4G23750 40.782 2.65e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g01032 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01032 - - gmx:100813992 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00257 2 1971702 1972640 Spst3g01032 3 13659244 13660188 PCT