Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01020 ATGGATAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAGGGGATGGAGGTAGCAAGGAAGTTGAAGGAAGACTTGAGGATGCCGAATTCAGTTGACTCAAGAGATATGTTGGTGCAAAGGATATTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCAATGCATCAACTTCCGAGTTGCAGGCCACGAGTCAAGCATTTGCAACTTTGTTACCCGACTCCCCATTGTCTGTCCATGGAAGTCCTCTGAGTGAGTATGTTGATGGGTCCATCAAGAATCACCAAGAAATTAAACACGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGTGAGAGCGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAGGACATCCTCGGGGCCAAATATCCCAGAAGTTACTATAGGTGCACCTTTCGCAACACTCAGGGCTGTTGGGCCACGAAGCAAGTGCAAAGATCAGATGAAGATCCTAAAATATTTGACATAACCTACAGGGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGCCACACAGTCGTAACATTGACATTCACCATGTACAGGCATCACAAGAAAACCTCACAAAGTTCAGAAACATCTTATCTGCCAGCACAGATAAACTGGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCCACCCTAGACAACCAAGACAACCACAGCCTGATTCCTTTGACCCTAGAGAATGAGTGCTTCTTGAGCGACCAATGCCAAACACACCTGTTATCTCCAACAACACCAGAATCAAACTATTTCCCATCTCCAAATTTCCAGATGAATGAGTTTGATGGGATCTACAACAGGCCTTATTCAGAATCAGATATTAATGAGATCATTTCCACCAACACATCAGCTACAAATTCTCCAATTCCCGATTTCAATTTCTCGCTTGATCCAGTGGAAATTGACCCAAATTTCCCTTTCAACAGCCCCGGATTTTTCTCCTGA 1077 0.4345 MDSEWSWEQNTLINELIQGMEVARKLKEDLRMPNSVDSRDMLVQRILSSYEKALLILRCNASTSELQATSQAFATLLPDSPLSVHGSPLSEYVDGSIKNHQEIKHDSKKRKITPKWMDHVRVSCESGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPKIFDITYRGKHTCSQGNNAVLPPKSPDKQEKPHSRNIDIHHVQASQENLTKFRNILSASTDKLDNGDMAYPFTFPSTLDNQDNHSLIPLTLENECFLSDQCQTHLLSPTTPESNYFPSPNFQMNEFDGIYNRPYSESDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNSPGFFS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01020 358 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g01020 358 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01020 358 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01020 358 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g01020 358 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01020 358 FunFam WRKY transcription factor 53 118 195 - -
Spst3g01020 358 MobiDBLite consensus disorder prediction 193 212 - -
Spst3g01020 358 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 275 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01020 Spst-Chr3 13560980 13562254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01020 6 256 WRKY Transcription Factor Family AT4G23810 44.891 8.64e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g01020 WRKY 7.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01020 - - gmx:100815760 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00244 2 1904439 1905579 Spst3g01020 3 13560980 13562254 PCT