Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01006 ATGGCTACCTCAGCCATATTATGTGCTTTCTGTCTCTTCCTTTTCCATCTCCAAAGCACGAGAGGGGATAACAACAAACAGAATAACTGCAACACCTTGCGATGCGGCGATATAGAAATTCAGTTTCCTTTCGGGTTGAAAGAATCCAACCAAGATCGTAGCTGCAGGTATTTTCCAATTCCAACTTTCCAACTTTCATGCATCAACCAGACAAAAACCATTGTAAACCTTCCAGGTTTCGGGAACTTAACTGTGAAAAACATCGATTACGCATCCCAAAGCATCCGAGTCAACGACCCCGATGGGTGCCTTCCAAAACGGTTCTTACACGGGTGGAACCTTTCGGATTCACCTTTTTTTCTGAACCCCTTGATTTATGGATCAAGTCCCTTCAACCTCACTTTCATGCGATGCCCTTCAAACGTGACGGACTCATCTCGATACCCGTTAATGCCAATTTCGTGCCTGAGCGACAACAGAAACTATTCGGTGATAGCCTCGTGGTCACAACCTATTGTGTCGTCAACGACGATGTCGGAACAGTGTCAAGTCATGTCTCAAGCTCTTGTTCCTCTCCCAGTCTTGGACATGCCTATGTGGCCCTTCTGGCCCGATCTCAACTCAGACCTTGAATTGGTGTGGACCGAACCAAGGTGCAGCGATTGTGCACTCAGTGGTCAAGCTTGTGGCTTCACTAATCAGAAAAACAAAAGTCTTCGAGTTGGGTGCTTTCCTAGGGACTCCAGCAAAGGTCTTTCACGAAGTGCGAAATATGGGTTATCCATAGGAGTGGGAATACCAGGACTCTTATGCCTAATCGGGATTTCTTGCTTTATTTGCGGTAAGCTAAGGATGGTGAGGCACCGTGAACGTGGTGGCAGAGATGTTCCGATGACAATTTCCCTGGAACCAATTCCATTGGTAACGGGTCTTGACGGTGCCACCATTGAAAAGTATCCGAAAACTCTTATCGGAGAGAGTGGTCGGTTATTGAAGGCCAATGACAACACCTGCGCAATTTGCCTCTCTGAATATGAACCCAAAGAGACTCTGAGGAGCATACCCGAATGCCACCATTATTTTCACGCAGATTGCATAGATGAGTGGCTCAGATTAAATGCCACCTGCCCCCTCTGTAGGAAGTCGCCGGAGACATCCGCAGCTTCCTTTTCTTCCTTTTCTCCCACTTCCTCTCTCTCCTCTCCACAATAG 1212 0.4719 MATSAILCAFCLFLFHLQSTRGDNNKQNNCNTLRCGDIEIQFPFGLKESNQDRSCRYFPIPTFQLSCINQTKTIVNLPGFGNLTVKNIDYASQSIRVNDPDGCLPKRFLHGWNLSDSPFFLNPLIYGSSPFNLTFMRCPSNVTDSSRYPLMPISCLSDNRNYSVIASWSQPIVSSTTMSEQCQVMSQALVPLPVLDMPMWPFWPDLNSDLELVWTEPRCSDCALSGQACGFTNQKNKSLRVGCFPRDSSKGLSRSAKYGLSIGVGIPGLLCLIGISCFICGKLRMVRHRERGGRDVPMTISLEPIPLVTGLDGATIEKYPKTLIGESGRLLKANDNTCAICLSEYEPKETLRSIPECHHYFHADCIDEWLRLNATCPLCRKSPETSAASFSSFSPTSSLSSPQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01006 403 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Spst3g01006 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 385 IPR013083 -
Spst3g01006 403 Pfam Ring finger domain 336 380 IPR001841 -
Spst3g01006 403 CDD RING-H2_EL5-like 338 380 - -
Spst3g01006 403 SUPERFAMILY RING/U-box 331 383 - -
Spst3g01006 403 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Spst3g01006 403 SMART ring_2 338 379 IPR001841 -
Spst3g01006 403 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 383 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01006 Spst-Chr3 13436983 13439756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01006 28 383 C3H Transcription Factor Family AT2G46495 36.915 3.96e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01006 - - gmx:100810240 628.632