Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00990 ATGACAATATCTGTTTTCTCAGTTCCGACGCCTCAGTTGTGCATCTACAAAAACTCATGGCCAGCTGCAATTTACCCGTCTCTTTCTTATTCTTCTTCTAAGTTAACTGTTCCACTGTGCTCTCCTTCCCCTCCTACTTCTGTTATCGAAGAGGGTGCTTCTCCTGCACCAGACGATATTCCCGTTGTTGATCGCTCAGAATTCACGAGCGGTTGTACTGCATGTGGAAGAGAAGAAATAGAGAAAGGATGCAATGGTGAAGGAAGGATTCAGGGTGGGATTGCAACAGTACCGGGGTTTGGGTGGTGGCCTATAAAGGCTTACAGGCCATGCCCTGCATTTGTAGCATCTGGGGGTAGGTACAGGCGGCAAGGACAAAGCATGGACGAGGTTGTCTCTGGAAGTGGTAAAACACCCACAGTAAGAACTGCCAGTGACTCGAAGACAAGATTGTTTGTGTCAGAGAAATCAGCAGAGTGCAAAATGGACGATTCTGAAACCAAACAACGAATTGAGGAAACTGTTCGCAGGATTTTGCAGGAGTCGAATATGGACGAGGTTACGGAGTCCAAGATTCGAAAGCAGGCTTCCGAGCAACTTGGTCTCAACCTGTCTCAGCCTCATTTCAAGGCCTTTGTGAAACAGGTCGTGGGGGCTTTTCTCGAAGAGAAGTTACAAGAACAAGAAGCACAGCAGCCACAAGAAGAAGAAATTGACGAGGAAGAAGTGGAAGAAGAACAAGAAGTTTCCAAGGGCAAGGAGTACGATGATGAGGGCGATCTCATCATCTGCAAGCTTTCAGATAAGAGAAGGGTGACCATTCAGGATTTCAGAGGGAAAACATTGGTCTCCATTCGCGAGTACTATAAAAAGGATGGGAAGGAACTTCCTACTTCCAAAGGAATAAGTTTGACCGAGGAGCAGTGGTCAGCCTTTAAAAAAAATCTGCCTGCCATCGAAAAAGCCATCAAGAAAATGGAGTCTCGTTGA 990 0.4636 MTISVFSVPTPQLCIYKNSWPAAIYPSLSYSSSKLTVPLCSPSPPTSVIEEGASPAPDDIPVVDRSEFTSGCTACGREEIEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTPTVRTASDSKTRLFVSEKSAECKMDDSETKQRIEETVRRILQESNMDEVTESKIRKQASEQLGLNLSQPHFKAFVKQVVGAFLEEKLQEQEAQQPQEEEIDEEEVEEEQEVSKGKEYDDEGDLIICKLSDKRRVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWSAFKKNLPAIEKAIKKMESR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00990 329 MobiDBLite consensus disorder prediction 232 247 - -
Spst3g00990 329 FunFam RNA polymerase II transcriptional coactivator KELP 253 329 - -
Spst3g00990 329 PANTHER OS01G0235100 PROTEIN 1 149 - -
Spst3g00990 329 MobiDBLite consensus disorder prediction 126 147 - -
Spst3g00990 329 SUPERFAMILY DEK C-terminal domain 159 221 - -
Spst3g00990 329 MobiDBLite consensus disorder prediction 128 147 - -
Spst3g00990 329 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 165 222 IPR014876 -
Spst3g00990 329 Gene3D Transcriptional Coactivator Pc4; Chain A 252 329 IPR009044 GO:0003677|GO:0006355
Spst3g00990 329 Pfam DEK C terminal domain 166 221 IPR014876 -
Spst3g00990 329 Gene3D - 156 224 - -
Spst3g00990 329 Pfam Transcriptional Coactivator p15 (PC4) 264 315 IPR003173 GO:0003677|GO:0006355
Spst3g00990 329 MobiDBLite consensus disorder prediction 226 254 - -
Spst3g00990 329 SUPERFAMILY ssDNA-binding transcriptional regulator domain 263 325 IPR009044 GO:0003677|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Spst3g00990 DEK_C 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00990 K25815 - vra:106768868 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00990 3 13334943 13344138 Spst3g00990 3 13334943 13344138 ECH