Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00984 ATGGGTGTGCCACAAACTCCAACCCCTTCTCCACATTTGTATCCACAAGAACTTCAGCTTAAACTGTACCAAGCCTTCATCTTCTCAATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACATACTTCCCACCACTGCTAATCCTCAAACTACATATCCTTACCCTTCACAACCTTGCCGATTAGATCTTACAGTGCAATTTCTTGACAAACTTCCAATAATTTTATTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTAGGAGAATTTGAGCCGAAGGAAGAACTGCTACAAATCCCTTATTGCAAGCATGTGTTTCATACCCACCATAGCAAGGTGAAATTTCAGAATGAACCTCCTGTGGCTGTGGCTGTGCCTGTGCCTGTGGAGATGCCATAA 471 0.4268 MGVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPTTANPQTTYPYPSQPCRLDLTVQFLDKLPIILFDEDFGTRDSVCCVCLGEFEPKEELLQIPYCKHVFHTHHSKVKFQNEPPVAVAVPVPVEMP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00984 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 142 IPR013083 -
Spst3g00984 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 132 - -
Spst3g00984 156 SUPERFAMILY RING/U-box 85 133 - -
Spst3g00984 156 Pfam RING-like zinc finger 107 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00984 Spst-Chr3 13305856 13309187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00984 3 131 C3H Transcription Factor Family AT4G10150 37.037 7.96e-25 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00984 K19039 - pvu:PHAVU_002G300500g 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00984 3 13305856 13309187 Spst3g00984 3 13305856 13309187 ECH