Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00955 ATGGCACTAAGTGGTTGGCATTGCTGGATCATCTTCATCGTTCTTCTAGCATCTTTATTTCATACCTCTTCTGCTGCTTCTGACTCTGAATTGCTCCTCAAAGTCAAAGATAACTTGGAAAACTACGGTTCCTACTTGGACTCATGGAACTCTTCCACTCCTCCTTGCAACGTTGGCCATGCCAACTGGCGTGGCATTCTTTGCTACGAAGGAAAAGTGTGGGGTGTGAAGCTTGAGAACATTGGGCTCGCAGGCTTCATCGACATAGAATCTCTTAAGGGCTTGCCTTACCTTAGAACCATGAGTTTCATGAACAATAATTTGGAGGGTTCGTGGCCAGAAATTCACCATTTGGTTGGTCTCAAATCTGTTTACCTTTCGAATAACAAGTTTTCTGGGGAGATACCTTATAGAACCTTTGCGGGGTTGCAGTGGTTGAAGAAAGTTCATCTGTCGAACAACCATTTCTCGGGTTCTATTCCAACTTCTCTGACGCTGTTGCCGAGGCTCATAGAACTGAGGTTGGAGGGGAACGAGTTCACTGGCCCCATTCCCCATTTTCATCACCTGAACAGATTGAGATCGTTTAGTGTTGCTAATAATCAGTTGCAGGGTCAGATTCCTACCACCGTTAGTAGAATGCCCATTTCTGCCTTTGCCGGTAATGAAAGGTTATGTGGAGCCCCATTGGAATCATGCACCGTGAAGCCCTCAACTGCGAGCATGATTGTGGCACTGGTGGTGGTTTGCCTGGCAGTGCTTGTAATTGGAAGTGTAGTGTTGATCCTTCACAGAAGAAAGAACCGAGGGTGTGTAACGGGCGCGGACAATCCACCCAGTTCCCTTGGAAAAGGGCGTGGGAGGGAAATGTATGATGATAACCGCTCGTCCTTCAGGTCAACGACCTCCTCACACAGCAGAAGAGGTGACCCAATGAGACTCTCTTTTCTGAGAGGTGACATAGATCAGTTTGACCTGCAGGAGTTGCTGAGAGCCTCTGCTGAGATTTTGGGGAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGTTGAATGGACCAATTATTGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGAGCACATGAGAAGGTTAGGGAGGTTGAGTCATCCTAACTTGCTTCCTCCTGTGGCTTACTATTACAGAAAGGAGGAGAAGCTCTTGGTCACTGACTATGTTCAAAATGGCAGTCTCGCTGTTCGTCTTCATGGGCACCAATCCCTGGGAGAACCAAGCCTTGAGTGGCCAATCCGGTTGAAGATTGTGAAGGGCATAGCAAAAGGTCTTGAATATCTGTACAGGGACATGGCAAGCCTAATTGCCCCACATGGAAATCTCAAGTCATCTAATGTTCTCTTGACTGAATCTTTTGAGCCTCTCCTCACAGACTATGGCCTAGTTCCAGTGACAAACCAAGAAATGGCTCAGGACATAATGGTGATATACAAGTCTCCTGAGTATTTGCAACAAGGAAGGATTACAAAGAAGACTGATGTGTGGTGCCTTGGAATACTAATTCTGGAGATCCTAACTGGGAAGTTCCCTGCAAACTTTTTGCAAAAGGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGGTAGAGTCAGTTGTGCCAGAAGAGTGGACCAATGCTGTGTTTGATCAGGATATGGGGGCAACAAAGAACAGTGAAGGAGAAATGGGAAAGCTTTTGAAGATTGCCTTGAATTGTTGTGAAGGGGATGTGGATAAGAGGTGGGATTTAAAGGAAGCAGTAGAGAAAATCCTGGAGGTGAAGCAGAGGGATGATGACCCAGAGAATTTTTTTACATCTTTTGCTAGTGAAGCAGACATGATGTCTTCAACATAA 1890 0.4614 MALSGWHCWIIFIVLLASLFHTSSAASDSELLLKVKDNLENYGSYLDSWNSSTPPCNVGHANWRGILCYEGKVWGVKLENIGLAGFIDIESLKGLPYLRTMSFMNNNLEGSWPEIHHLVGLKSVYLSNNKFSGEIPYRTFAGLQWLKKVHLSNNHFSGSIPTSLTLLPRLIELRLEGNEFTGPIPHFHHLNRLRSFSVANNQLQGQIPTTVSRMPISAFAGNERLCGAPLESCTVKPSTASMIVALVVVCLAVLVIGSVVLILHRRKNRGCVTGADNPPSSLGKGRGREMYDDNRSSFRSTTSSHSRRGDPMRLSFLRGDIDQFDLQELLRASAEILGSGCFSSSYKAALLNGPIIVVKRFKQMNNVGKEEFQEHMRRLGRLSHPNLLPPVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQSLGEPSLEWPIRLKIVKGIAKGLEYLYRDMASLIAPHGNLKSSNVLLTESFEPLLTDYGLVPVTNQEMAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVESVVPEEWTNAVFDQDMGATKNSEGEMGKLLKIALNCCEGDVDKRWDLKEAVEKILEVKQRDDDPENFFTSFASEADMMSST 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00955 629 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Spst3g00955 629 ProSiteProfiles Protein kinase domain profile. 331 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00955 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 609 IPR046959 -
Spst3g00955 629 Gene3D Phosphorylase Kinase; domain 1 296 406 - -
Spst3g00955 629 SUPERFAMILY Protein kinase-like (PK-like) 335 609 IPR011009 -
Spst3g00955 629 SUPERFAMILY L domain-like 53 215 - -
Spst3g00955 629 FunFam pollen receptor-like kinase 1 300 406 - -
Spst3g00955 629 Gene3D Transferase(Phosphotransferase) domain 1 407 615 - -
Spst3g00955 629 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Spst3g00955 629 Pfam Protein kinase domain 334 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00955 629 Pfam Leucine rich repeat N-terminal domain 26 68 IPR013210 -
Spst3g00955 629 Gene3D Ribonuclease Inhibitor 188 233 IPR032675 -
Spst3g00955 629 MobiDBLite consensus disorder prediction 273 310 - -
Spst3g00955 629 FunFam Pollen receptor-like kinase 1 407 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00955 Spst-Chr3 12969787 12972729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00955 2 628 Receptor kinase-like Gene Family AT5G35390 51.903 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst3g00955 Pkinase 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00955 - - gmx:100804368 1005.36