Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00953 ATGGAAGGCTATGATACACGGAGGGGTGACGGTGGAAATGGAGTCGTAGTGCCACCGTGTACGTGTTCGCGCGACGAATTTCGCCCTCGTGGCGGTGGAAAAGTATTATCGCGACTTGTTGCTACTGCAAAAAACGGTTCTTCTGCTTCAGAATATGGCATGGCGGTGACGAGGAACGTTAAGAAAAAGCAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGTGTGTTTCGGAAGGATGGTCCTCCGCTCGGTCAGGAGTTTGATTTTCTTCCATCTGGATCCAAATATGTCACTTCTGCTTGTCAAGAGGACCAAGGATCCCCGAAAAGGAGGAAGGTTTCCAAGGGTGCAATTCAAAGTCTTGCCAATTGTAACATGAAAGCACCTGGGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGACGCTGGAGACCTTCCAATTGTTTTTGGCGTTGATGAGCAAGAAGTTCCTTTAATTTCAAACTCTATTGGACAGAAAACGATCCGGGAAACCAACAGGTCACGGAAAACAGTAAACAGGAATGTTATGCCAAAACGTAAAATGCAGAACAAGAGAAATAAATCACAGGATAAGAGGAAACTTTCCTTGCAAAGAAAAGTGGGAGAATTGAACTTACATGTGACTAAGAATCAGTGCCCTAGCGAAAACTGTGAACTAGCTCTGGATCATGCAATATCTGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACTGATCTGTTTATGTGTTCCAGTCATCTTGCTGCCAGTGGAATGCTTGGCTTCTCACTTTGTAAAGATGCACTAGTGAAGTTTCCGCCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCTCCAGAAATTGTTAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTTGCCCTTCTTACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCACTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCTGGGCTTCTGGAGAAGATCACTAAATTCTCTCACTTGGATTGAAATACTCCGTCAAGTGCTGGTAGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGCGAGTTGTTTAATATATTGTCAGAGAGAGGAAACATTGGATGCAAAATTGTTGAATTAAACCTTGCCAGCACTACAGAGGAACTTGAGCCTTTAATATCTTCCACTCTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCAACTGCTTACCGATTGCGTGTGAGCACAGTTATCAAGGACAGTGACGAATCTCATTCAGATACGGAGGACTCTGGTAGTGTTGATGATGAACTTGATGACACTGATACATGCAGCAGTGGTGATGATTATGATAATGATTCAATAAACTCTAGAATGAGAAAATTAAAGCGTGCAAACAGTCAGAAAAACAACATGCTGAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGCGTGGTTATTAGGGCTGATGGATAGTGAATATTCAGAATTGAACATTGAAGAAAAATTGAATGCGTTGGCAGCTTTAACTGATCTTGTTTCCTCTGGATCCAGCATCAGGTTGAAGGATTCATCAAATGTTACAACTGATTGCAATTCTAGCATCCAAGTACGAGGGTCTGGAGCTAAAATAAAGAGATCATTAATAAAGAAAGCTGGGCCACTTTTGACCCAGAAAGCACACTTGAATTCTGATCCCTGTACTGTAGACTCGTCGTCATTATTCTCAAGATTCCATAGTTATGAAGTTTCCTTCCAAAAGGAAAAAGGTTCATCTATTTCACACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATATAGATGATCCAGGCCACAGGAGAATATACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTAAGGAGGCGTTGTATGCCTTGATGTCAGTTCTGGATGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCACTGTGCAGATTTATGTGCAGGATTAATACTAATAGTTCTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTGACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAGCCTGAACATGACTGAGACTGCTAAAGACTCTTCGCCTTCAGCTGGGGCTGTGGTAATTGAAGGTGGAAAGAAAGTAGAGGAGCAAATTAAAAAATGGACCCGTGTTCAAGAATATGATACTTGGATCTGGAATTCTTTTTATTCAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTGGATTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGACGAAAGGCACTGTAAAATTTGTCACATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCTGTCCATATTGCCACATGCAGGGAGAAAGAAAGCAGAAATACATTTCCTAATCATAAAGTGCTACCGTCACAGATTCAATCTCTGAAAGCTGCCGTTTATGCTATTGAGTCTGTCATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGGCTCAGACGCACCTCAACTTTAGTAGAGCTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCGATGCCCCATACATCATCTGCCCTTGGTCTGTGGTTGGTGAAGTTGGATGTCATAATTGCCCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCAGTAAGAGTTAA 3198 0.4106 MEGYDTRRGDGGNGVVVPPCTCSRDEFRPRGGGKVLSRLVATAKNGSSASEYGMAVTRNVKKKQKRKGLQELFTADYIVNSVFRKDGPPLGQEFDFLPSGSKYVTSACQEDQGSPKRRKVSKGAIQSLANCNMKAPGKKHGIGKGLMTVWRATNPDAGDLPIVFGVDEQEVPLISNSIGQKTIRETNRSRKTVNRNVMPKRKMQNKRNKSQDKRKLSLQRKVGELNLHVTKNQCPSENCELALDHAISEEGVDRVSMLIDDEELELRELQEGTDLFMCSSHLAASGMLGFSLCKDALVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLGFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNIGCKIVELNLASTTEELEPLISSTLSSDITLFEKISSTAYRLRVSTVIKDSDESHSDTEDSGSVDDELDDTDTCSSGDDYDNDSINSRMRKLKRANSQKNNMLKVYTEIDESHPGEAWLLGLMDSEYSELNIEEKLNALAALTDLVSSGSSIRLKDSSNVTTDCNSSIQVRGSGAKIKRSLIKKAGPLLTQKAHLNSDPCTVDSSSLFSRFHSYEVSFQKEKGSSISHPIQSVFLGSDRRYNRYWLFLGPCNIDDPGHRRIYFESSEDGHWEVIDTKEALYALMSVLDDRGKREALLIESLERRQTSLCRFMCRINTNSSGMGSMSHSDQSELDMVTDDSYSPASDVDSLNMTETAKDSSPSAGAVVIEGGKKVEEQIKKWTRVQEYDTWIWNSFYSDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAVHIATCREKESRNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDGVVEEIIASFASMPHTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTSKS 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00953 1065 SMART testlast3 320 379 IPR018501 -
Spst3g00953 1065 ProSiteProfiles DDT domain profile. 320 379 IPR018501 -
Spst3g00953 1065 MobiDBLite consensus disorder prediction 535 553 - -
Spst3g00953 1065 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 590 629 IPR028942 -
Spst3g00953 1065 Pfam DDT domain 323 376 IPR018501 -
Spst3g00953 1065 PANTHER HOMEOBOX PROTEIN SIX 211 1046 - -
Spst3g00953 1065 MobiDBLite consensus disorder prediction 527 557 - -
Spst3g00953 1065 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 707 780 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00953 Spst-Chr3 12926153 12933722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00953 180 1009 Homeobox Transcription Factor Family AT5G44180 24.876 5.11e-65 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Spst3g00953 WSD 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00953 - - gmx:100792062 1807.73