Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00937 ATGGGGAGGAAGTGCTCACATTGTGGAGTCATAGGCCATAATTCAAGGACCTGCACATCTTTGAGAGGCTCTACTCTCGTTGGACTTCGCCTCTTCGGCGTGCAATTAGACACTTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCTTTACCCTCTTCATCATCTTCCTCATTTTCTTCATCAAGGCTAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTACCTATCAGATGGTCTCATAGGTCGAGTACAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTTGGACTGGAGAAGCTCGGAAAGGGTGATTGGAGGGGAATCTCTAGAAACTTTGTGACCACAAGAACCCCGACACAAGTGGCAAGCCATGCTCAGAAGTATTTTCTTAGATTGGCAACTATAGATAAGAAGAGGCGACGTTCAAGTCTTTTTGACTTGGTTGGTAGCAACAACCCCAATATGGCAGGTTGTAATTCAGTTTCAGCTCATCATCAAAATGATGAGTCTAAACGTGATGAAGTTAAGAATAATGGTGCCACTTTGTCATTGCTAGGGCGTATAACCCACTTTCAAGAAGAAACTAAATCTGATTATAAGCAAGAAAATCTTGATAATTGCCCTCATCAAGTTCCTAATCTGGAGCTCACTCTTGCAGGCCCCAAGGGAAAGACCCTTCATCAGGAACAAAACAAACCAACCCCTTCTGCTCCATTCCTGCTTGGGCCAATTACTGTGACTTAA 774 0.4367 MGRKCSHCGVIGHNSRTCTSLRGSTLVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRLTIDENSDRTSFGYLSDGLIGRVQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKRRRSSLFDLVGSNNPNMAGCNSVSAHHQNDESKRDEVKNNGATLSLLGRITHFQEETKSDYKQENLDNCPHQVPNLELTLAGPKGKTLHQEQNKPTPSAPFLLGPITVT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00937 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Spst3g00937 257 MobiDBLite consensus disorder prediction 233 257 - -
Spst3g00937 257 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Spst3g00937 257 SMART sant 91 141 IPR001005 -
Spst3g00937 257 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Spst3g00937 257 CDD SANT 94 139 IPR001005 -
Spst3g00937 257 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Spst3g00937 257 FunFam transcription factor MYB1R1 93 144 - -
Spst3g00937 257 PANTHER TRANSCRIPTION FACTOR KUA1 3 208 - -
Spst3g00937 257 Gene3D - 93 145 - -
Spst3g00937 257 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Spst3g00937 257 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00937 Spst-Chr3 12747146 12748348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g00937 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00937 - - gmx:778093 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00937 3 12747146 12748348 Spst3g00937 3 12747146 12748348 ECH