Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00920 ATGGGAAGAGCTCCATGCTGTGACAAAGCCAACGTTAAAAGGGGTCCTTGGTCTCCTGAAGAAGATGAAACCCTAAAAAACTATCTCAAGAAACATGGCACTGGTGGCAATTGGATAACTCTCCCACAAAAAGCAGGCCTCAAGCGGTGTGGCAAGAGTTGTCGTCTGAGATGGCTTAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGATGAGGAAGACCAAGTTATCTGCACCCTTTATTCAACCATTGGAAGCAGGCAATTACCTGGGAGAACAGACAACGATGTGAAGAACCATTGGAACACTAAGTTAAAGAAAAAGTTTTTGGCAGCAAACACCAATGCCACTGCCAATACTGTTTGTCCACAGTTCTCAACTTCCAATACTCCTCAATCTCAAGCTGAAGACTGCGTCTTTGATCATGAGAACTCAGCTGAGTTTCAAGTTTTGGGTTTGGAGCAGACCCATATTCCAGTTCCTTCACCATTGCCTTTCGGATCTAATGTCCCAGGGCTTGGCAGCAGTTGTAGTGTACCAATATCCAGTGAAGTTTCAGTTCTTCTGAACTCGACATCCTTGGTGAAACATGAAAATGAGACTCAATGGTTTGGCTACCATGACAATGTTGAAGGTGAAAATGAAGCACTTCTGCTTGATTTTGTGTATGAAGATCTCTTGTTCGGTAATGGATTTGTTTCTCAAGAAAAAAGCAACCAAATTTCCCCATCATTTGGCTAA 747 0.4311 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICTLYSTIGSRQLPGRTDNDVKNHWNTKLKKKFLAANTNATANTVCPQFSTSNTPQSQAEDCVFDHENSAEFQVLGLEQTHIPVPSPLPFGSNVPGLGSSCSVPISSEVSVLLNSTSLVKHENETQWFGYHDNVEGENEALLLDFVYEDLLFGNGFVSQEKSNQISPSFG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00920 248 CDD SANT 16 62 IPR001005 -
Spst3g00920 248 Gene3D - 7 68 - -
Spst3g00920 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 111 IPR017930 -
Spst3g00920 248 SMART sant 67 109 IPR001005 -
Spst3g00920 248 SMART sant 13 64 IPR001005 -
Spst3g00920 248 FunFam Transcription factor RAX3 7 68 - -
Spst3g00920 248 SUPERFAMILY Homeodomain-like 11 103 IPR009057 -
Spst3g00920 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Spst3g00920 248 PANTHER OS09G0431300 PROTEIN 1 137 - -
Spst3g00920 248 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst3g00920 248 Gene3D - 70 136 - -
Spst3g00920 248 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00920 Spst-Chr3 12572064 12573252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00920 1 153 MYB Transcription Factor Family AT4G37780 60.870 8.48e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g00920 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00920 K09422 - gmx:778160 274.633