Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00919 ATGATGTTGGGGGAGACTCACCGCGCAAATCCAACCGTTCATGTGCCACCGTGGCCGCTCCTCCACGAATCCACGCCGGACATATTTTTACCGTACACCGCCAATGCCGATTACTCGCCGTACTCTCTGCAAGAAGCGCTCAGCGCACTTCAGCACTACGATTCCACTGATGCTGAGTCAGACTCTGATGCTCCGTCCCGGGAACCGGAGGTCCCGGTTGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTAGGAGATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGCCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGTCGTGACCCCCGCAAGTATCATTACTCCGGCACGGCGTGCCCCGATTTTCGTAAGGGGATTTGCAAGAAGGGTGACGCTTGCGAGTACGCTCACGGGGTTTTCGAGTGCTGGCTCCACCCCGCACGTTACCGTACTCAGCCGTGCAAGGACGGCACTAGTTGCCGCCGCCGCGTGTGTTTCTTTGCCCACACGCCGGAGCAACTTAGGGTTTTGCCACAGCAGAGTCCACGGAGTGCTGACTCGTACGACGGGTCTCCTTTGAGACTTGCTGTGGAGTCATCTAAGACGGTGGCGCCCTTCGTGTCTTCTCCAGGGTCGGTGTCGCCGCCGGTGGAATCTCCCCCTATGTCGCCGATGACTCGTTCGGGATCTGTGTGTGTTAATGAGATGGTTGCTTCGCTGAGAAACTTGCAACTGGGGAAGGTTAAGTCGTTGCCTTCTTCTTGGAATGTTATAGGATCTCCCGGGTTCGGGTCTCCCAGAGGACCCGTTATCCGACCCGGATTCTTCAGTCTGCCATCGACCCCCACGCAGCCCCCGGTTCGCGGTGGGGTCAACTGCTTTGACCTGTGGGATCAGAGTTGTGAGGAGGAGCCCGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAATGCTCTTGACGGGTCGGGTTCTGGTGGCACCGGGGTTCCCGATGTTGGGTGGGTTTCGGAGCTTGTGAGTCGCTGA 1080 0.5815 MMLGETHRANPTVHVPPWPLLHESTPDIFLPYTANADYSPYSLQEALSALQHYDSTDAESDSDAPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGICKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRLAVESSKTVAPFVSSPGSVSPPVESPPMSPMTRSGSVCVNEMVASLRNLQLGKVKSLPSSWNVIGSPGFGSPRGPVIRPGFFSLPSTPTQPPVRGGVNCFDLWDQSCEEEPVMERVESGRNIRARMFEKLSKENALDGSGSGGTGVPDVGWVSELVSR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00919 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Spst3g00919 359 MobiDBLite consensus disorder prediction 214 233 - -
Spst3g00919 359 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Spst3g00919 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Spst3g00919 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Spst3g00919 359 PANTHER UNKEMPT FAMILY MEMBER 43 357 IPR045234 -
Spst3g00919 359 Gene3D - 121 184 - -
Spst3g00919 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00919 Spst-Chr3 12565670 12566749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00919 69 257 C2H2 Transcription Factor Family AT5G12850 48.744 4.63e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g00919 zf-CCCH 5.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00919 - - gmx:100808676 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00919 3 12565670 12566749 Spst3g00919 3 12565670 12566749 ECH