Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00909 ATGAATAAGATCAGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCAAAGCTTGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATTGAACATCTTGAAGCCAAAGTTGAGGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACCATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACTAGACCAGTTATGGTGAATGGAAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCCGAAAAGACCAACTGGGTGATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAGAAAGAGGGAGAGCTAGTGGTGTCGAAGATATTCTACCAGACACAACCTAGGCAATGCAATTGGTCAGATAGAAGTGCCACAACTGGTGAAGGAAGTGGAGAACAACAAGCAAACAATAATGGAAGAAGAGACAGTGGAAGTGGTAGCTGTTCTTCTAAGGAAATTGTTACTCACAGAGATGAAATGTCTGCTATCGTTGGAGTCCCTCAAATAACAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAAGTGCAAGCACCAGGGTCGTGTGAGGAAGTACATGAACGGCATAATATTGTAGCACATCACCATCAACAACAGCAGCAGCAGCAAAATCAGCATGCGCACCAACAAATTGCCACCACAGCCTTCCATATCAGTAGGCCTTCGCTTCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGACGACAATTCCTACCATGTGTCCAGAATCATGCTTCAAAATGAAAATTTTCAGCAACACCATCATAAACTTGCAGGAAGGTCTGCGTCTGGTTTGGTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAATCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGACAGACCCTAGCAACCTGCAGGATCATCATGAGTAG 1338 0.4529 MNKISNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEQQANNNGRRDSGSGSCSSKEIVTHRDEMSAIVGVPQITTFNTSLDIQQLKSDHFSFIPFRKSFDEVGIGEASTAREVQAPGSCEEVHERHNIVAHHHQQQQQQQNQHAHQQIATTAFHISRPSLPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQHHHKLAGRSASGLVIMGCTSTDIKEESSITNQQEAEWLKYSSYWTDPSNLQDHHE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00909 445 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Spst3g00909 445 MobiDBLite consensus disorder prediction 216 248 - -
Spst3g00909 445 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Spst3g00909 445 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Spst3g00909 445 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Spst3g00909 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 336 IPR044799 GO:0003700
Spst3g00909 445 FunFam NAC domain-containing protein 73 56 212 - -
Spst3g00909 445 MobiDBLite consensus disorder prediction 216 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00909 Spst-Chr3 12482525 12486841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00909 14 434 NAC Transcription Factor Family AT5G56620 53.304 1.18e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g00909 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00909 - - gmx:100794811 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00909 3 12482525 12486841 Spst3g00909 3 12482525 12486841 ECH
Spst3g00909 3 12482525 12486841 Spst4g02559 4 65696577 65700563 PCT