Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00907 ATGGAGAATACCTGGATCCTCACCTTTCACCTTCTCCTCCTCCTGCTCCGTTCAAATGCAGCAGAAGGGGCCATTAGTGTGGGTGTTGGTGGAAGAGGTGGCATAAGTGTTGGCATTGGTATTGGCAATGGGGGCAGTGGTGGTAACACCCCAGGACCCTCTGGATCCTCAGTGCCAAACCTCAACAATGCTTTTACAGCCCTCCAGGCATTGAAATCTGCAATCATTGATGACCCTTCGAAGATTTTGGACACTTGGGTTGGTCCCGATGTGTGTTCCTACAAAGGTGTCTTCTGTTCTAATTCTCGGGATGACAATGGAATTGCCACAACAGCAGCAACTGAGTCTTCTGTTGTTGCCGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAGCTCTCTTTGCTCTCTGATATCACTCTTTTCCATCTCAACAGTAACAGGTTTTCTGGCTCAGTTCCAGACACATTCAGAGACCTCACTTCCCTCCAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGCCCTTTTCCCATGGCCACTCTATCCATGCCAAGCCTCATCTACTTGGACCTCAGATACAACAACTTCTCAGGGCAAATTCCAGATGATCTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGAAGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGTGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTAAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCCCAAGGAGTAGGGATCTTCACTGAGATGCAAGTGTTGGATGTGAGCTTCAACTCTCTTATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCACATAACAAGCTCTCAGGGGAGTTATCAGATGTGGTGTGCTCTTTGAGAAGCCTACTAAATCTAACAGTTGCTTACAATTTCTTCTCAGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCTGATAACTGTATCCCTGGCCGGAACATGCAGAGACCACAACCAGAGTGTTCTGTGATCCCTGGTGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAACCTCTTGTGTGTGCTACTCTGTCTGCAACTTTGTCTAAGCACACAAACTCACGTTCCTCTTCTCCCTGA 1254 0.4633 MENTWILTFHLLLLLLRSNAAEGAISVGVGGRGGISVGIGIGNGGSGGNTPGPSGSSVPNLNNAFTALQALKSAIIDDPSKILDTWVGPDVCSYKGVFCSNSRDDNGIATTAATESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNSNRFSGSVPDTFRDLTSLQELDLSNNQLSGPFPMATLSMPSLIYLDLRYNNFSGQIPDDLFNKKLDAIFLNNNNFEGEIPENLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLAHNKLSGELSDVVCSLRSLLNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSVIPGGSLNCLRIPAPKPLVCATLSATLSKHTNSRSSSP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00907 417 Pfam Leucine rich repeat N-terminal domain 62 100 IPR013210 -
Spst3g00907 417 Gene3D Ribonuclease Inhibitor 236 357 IPR032675 -
Spst3g00907 417 Gene3D Ribonuclease Inhibitor 62 235 IPR032675 -
Spst3g00907 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 55 395 - -
Spst3g00907 417 FunFam Leucine-rich repeat extensin-like protein 1 65 234 - -
Spst3g00907 417 SUPERFAMILY L domain-like 65 356 - -
Spst3g00907 417 PRINTS Leucine-rich repeat signature 167 180 - -
Spst3g00907 417 PRINTS Leucine-rich repeat signature 307 320 - -
Spst3g00907 417 Pfam Leucine rich repeat 146 201 IPR001611 GO:0005515
Spst3g00907 417 SMART LRR_typ_2 283 307 IPR003591 -
Spst3g00907 417 SMART LRR_typ_2 140 163 IPR003591 -
Spst3g00907 417 SMART LRR_typ_2 188 212 IPR003591 -
Spst3g00907 417 SMART LRR_typ_2 164 187 IPR003591 -
Spst3g00907 417 SMART LRR_typ_2 331 354 IPR003591 -
Spst3g00907 417 ProSiteProfiles Leucine-rich repeat profile. 166 187 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00907 Spst-Chr3 12458673 12459926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00907 59 390 Leucine-rich Repeat extension Gene Families AT3G24480 48.817 8.66e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00907 - - gmx:100786358 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00907 3 12458673 12459926 Spst3g00907 3 12458673 12459926 ECH