Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00905 ATGCAGTCACATCTCCATGGATCAAGACGAAGGAATCATGAACTTTTCATTTACAAGGCTTTGGCAGTCACGTGCGAAGAGGGTGCACGGAAGCTTCTGGGTCTGAGGGGAACAGTTTCACAAGGAAGATCTGAAATTCTGAATTCCGAACTGGAATCAGAGTTTCGTTTTCATTATCTTCCTCAGTTTTACCACTCTCTTCCGCCAATAACCAAGGCATATGGCACCGTTTGCGTGTTGGCAACTGCCACTTACCATCTTGGATTATACGATCTAATTCAGATTGCACTATTGTACGAGCGAGTGTTCTATGGTTTTCAGGCTGCTGATTGTTTGGGGAGATTTTTTACTATTAAGTTGTCAATTAGAGGTTTACTGCTGAAATTAAGATACGGTGTCCAACTTGAGCAGGGGCCATTTGACAGACGGACTGCTGATTTCTTGTGGATGATGATATTTGGCTCGTCTGCACTATTGGTTTTGTCTGCCATCCCCTTTTTGTGGTCCCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCTCTTAAGGCCTTCTATCTTCCATGGGCAATGCTTGCTTTGGATGTCATTTTTGGCTCGCCTCTTATACCTGACCTCTTAGGTATCATCGCAGGACATCTGTACTACTTCTTGACAGTGTTGCATCCATTAGCAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGGTGTATCCTTATGGTTTTCTGTTGCTTAAGGTGTTGTTATGCGCATGGGCAGTACCTACAGCCATACGTAAATTGGTTGGAAGGTGGAGAATTGGAATGCAACCAATTAGTCGTGCGCAGCCTGCTAATAACCCTCAGCAAGAGAGTGGCGCCGGAGTTGTTTTCAGGGGAAGGTCCTATCGACTTGGAGCTAAACATCAGTTGGGAATTAGAATGGGAACAGTGAATGAAAATAGGAAGAGGAAAATAGAGAGGTTGGATCCTGTAATGAAGGAGAATGTGATCGGGTGGCAAGAATTGAACGGAGAGAAAGAGATGACTTACGTCGATGAACATTTGATGTGTGATATTGACGGCACCGGCCACCATCTCACCGCAGCGGCCATCATCGGTCACGATGGCTCTGTTTGGGCTCAAAGCACTTCTTTTCCTCAGATTAAATCTGATGAGGTCTCTGGTATCATGAAAGATTTCGACGAACCAGGTTATCTTGCTCCCACAGGTTTACACCTTTCAGGAACTAAATACATGGTAATCCAAGGAGAACCAGGAGCTGTCATTCGTGGAAAGAAGGGATCTGGAGGCATCACCATAAAGAAAACTGATCAAGCTTTAGTTTTTGGTCTTTATGATGAACCTGTGACTCCAGGACAATGCAACATGGTTGTTGAGAGGCTGGGAGATTACCTCATTGATCAAGGTCTCTAG 1473 0.4426 MQSHLHGSRRRNHELFIYKALAVTCEEGARKLLGLRGTVSQGRSEILNSELESEFRFHYLPQFYHSLPPITKAYGTVCVLATATYHLGLYDLIQIALLYERVFYGFQAADCLGRFFTIKLSIRGLLLKLRYGVQLEQGPFDRRTADFLWMMIFGSSALLVLSAIPFLWSPFLAVPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDVIFGSPLIPDLLGIIAGHLYYFLTVLHPLAGGKNILKTPMWVYPYGFLLLKVLLCAWAVPTAIRKLVGRWRIGMQPISRAQPANNPQQESGAGVVFRGRSYRLGAKHQLGIRMGTVNENRKRKIERLDPVMKENVIGWQELNGEKEMTYVDEHLMCDIDGTGHHLTAAAIIGHDGSVWAQSTSFPQIKSDEVSGIMKDFDEPGYLAPTGLHLSGTKYMVIQGEPGAVIRGKKGSGGITIKKTDQALVFGLYDEPVTPGQCNMVVERLGDYLIDQGL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00905 490 CDD PROF 351 489 IPR005455 GO:0003779
Spst3g00905 490 SUPERFAMILY Profilin (actin-binding protein) 362 489 IPR036140 -
Spst3g00905 490 Pfam Profilin 362 489 IPR005455 GO:0003779
Spst3g00905 490 PANTHER DER1-LIKE PROTEIN, DERLIN 62 296 - -
Spst3g00905 490 PRINTS Plant profilin signature 358 371 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 411 425 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 386 399 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 463 476 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 443 458 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 476 489 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Plant profilin signature 430 439 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 360 369 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 399 419 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 472 489 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 380 389 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 423 437 IPR005455 GO:0003779
Spst3g00905 490 PRINTS Profilin signature 459 472 IPR005455 GO:0003779
Spst3g00905 490 Pfam Der1-like family 67 253 IPR007599 -
Spst3g00905 490 Gene3D Dynein light chain 2a, cytoplasmic 361 490 - -
Spst3g00905 490 SUPERFAMILY Rhomboid-like 65 241 IPR035952 -
Spst3g00905 490 SMART prof_2 362 490 IPR005455 GO:0003779
Spst3g00905 490 FunFam Profilin 360 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00905 Spst-Chr3 12421513 12430566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00905 362 490 Cytoskeleton Gene Families AT4G29340 81.538 5.43e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00905 K13989 - gmx:100783754 381.719