Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00901 ATGTCAATTTTTCATTCCATTTTCTATGGTTTAGTAGTTGTTATTCTTCTTCTACAAAATCCAAGTGCAACGCAATGCCATACCAAGGGAATTAGACCAAGGCCTGGGAATGGTCTATCTACCAATATGACCAGAGTCCAATTTTCAGAGGAGCAGTTCATGAAATGGGTGAGATTTGTAGGTGGCCTCAAACATTCTGTCTTTAAGACAGCCAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGATGCCAAGCAAAGGAGGTTTTTCGTCAATTCAAGACGCCATTGATTCCCTTCCTTTCATCAATTTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAATACCATCGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACGTTTGCAGTGAATTCACTTTTCTTCATAGCCAAGAATATCACATTCAAAAACACTGCCCCAATTCCAGCACCAGGGGCAGTTGGAAAGCAAGCAGTGGCATTGAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTATGATCAACTGGGTAGGCATTACTATAAGGATTGTTACATCGAAGGCTCTGTCGATTTCATTTTTGGAAACGCTCTCTCTCTCTTCGAGGGATGTCACGTGCATGCCATAGCACGAGTTACAGGGGCCCTAACAGCTCAAGGAAGAAGCAGTTTATTACAAGACACGGGATTCTCGTTTGTCCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTATACATACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCAAAACCATTTATTTCCCTGAGCTACATTGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1131 0.4385 MSIFHSIFYGLVVVILLLQNPSATQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKMPSKGGFSSIQDAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDTAQSQPLGTYGSATFAVNSLFFIAKNITFKNTAPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDQLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00901 376 FunFam Pectinesterase 77 374 - -
Spst3g00901 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Spst3g00901 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 373 - -
Spst3g00901 376 Pfam Pectinesterase 88 368 IPR000070 GO:0030599|GO:0042545
Spst3g00901 376 Gene3D - 77 375 IPR012334 -
Spst3g00901 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00901 Spst-Chr3 12387016 12390028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00901 92 375 Carbohydrate Esterase AT1G05310 49.315 1.01e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00901 K01051 - gmx:100802832 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00901 3 12387016 12390028 Spst3g00901 3 12387016 12390028 ECH