Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00899 ATGCTCACTAGATTACAAAATGGCACAATAATCATAAACAGCGACGTGTTCAGCGGAGTTTTGTTTTCATCTGGATCCCTCCAGTCAGCACAGTACTGGAAGCCTAGTACAGCTAACTACATTTTTATTGGTTCAGCTTCAACAGGGCTACATGCAGAGAAGGAGTATGCATTGTTTCTCTTTACATGTGAAGAATCTACTGATTCATATCTAAGCGCAGAGGAAGTTGATCTGTGGTACAGGGAATGGCTTCACGAGACACGAGTGTGTCAGATGTTTTGGGACACTGAGGTATCTTTCTTTTCTGAAGATACGTCGCTCCACAAAGTAGCAGGGACAGATGAAGATAGAGATTTCACTATGGGCCTTTTCCTCTTTGAATGTTTCACTTCACCGTTCCCACTATCACTATCCAAAGACCGCGATAGCATTTTCCTAACTCATCCAATGGGCAGGGCCATTAGGTGGTTGAAGGGGTTGTTTGGAATAAAGACAGACAGAGAGAGCAAAGATAATTCAAAGCCTAGTACCACATGGTGCCACTCAGACAGGGATCCCAAAGGTTTATGTCATAATCCTACCACTATTCCTCCCAATATTTCACCTGCTGAGGCTGCCTGGCTACAATCCTTCTACTCAGAAACTGAAAAGGAGCAGAACAAGCATGCCATTGCAGTTGCTGCAGCCACTGCAGCTGCAGCGGACGCTGCTGTAGCTGCAGCTCAGGCTGCCGTAGCAGTGGTTAGGTTAACTAGTCATGGCAATAGCAGAGACACCATGTGTGGTGGTGGACAAGAAAGGTTGGCTGTTGTCAAGATTCAAACCGTGTTCAGGGGATACTTGGCAAGGAAGGCATTGAGAGCCTTAAAAGGATTGGTGAAGTTACAAGCTCTAGTGAGAGGGTACTTAGTGCGGAAGCTAGCAGCAGCAACCCTGCACAGCATGCAGGCTCTAATTAGAGCTCAAGCAACAGTAAGATCTAAGAAATCTCGGGGACTCATGAGCACAAAGAATGAAGCACACGGATTTCAAACACAAGCGCGAAGATCCATGGAGAGATTTGATGACATAAAGAGTGAGTACATAGCTCCCATCCACAGCAGAAGGCTATCATCCTCCTTTGATGCCACAATGAACAATGCAAACAACAGTGGTGATGGGAGTCCAAAAATTGTGGAAGTGGACACTGGCAGACCAAAGTCAAGGTCTCGCAGGAGCAACACATCAATATCAGATTTTGGTGATGACCCATCATTTCAGACACTTCCATCTCCTCTCCCATTCACTCATTTATCCATACCAAACCACAGAACTTTCCACGACTCAGAGTGGGGCTTAACTGGAGAAGAGTACAGATTCTCTACAGCACAAAGCACTCCACGCTTCACCCCCAACTCTTGTAGTTGTGGCTCTCTTATTGTTGCACCTACGACACCTAAAAGTGTTTGCACAGAAAATTTTTTCTATGAACAGTACCACAATTTTCCAAACTACATGGCCAACACTCAGTCTTTCAAGGCCAAATTGAGGTCTCACAGTGCTCCAAAGCAGCGTCCGGATCCTGCTCCAAGAAAGAGGCTTACCCTCAATGAGATGATGGGGTCTAGGAGTAGTTTAAGTGGGGCTAGAATGCAAAGGTCTTGCTCACAGATTCAAGAAGCAATTAATTTCAAGAATGCTGTGATGAGTAAGCTTCAGAAGTCTACAGAATTTGGTAGGGAGACACCACCAACTTTTCCAACCAGAGGAGGCGGAGATTGGTGA 1764 0.4558 MLTRLQNGTIIINSDVFSGVLFSSGSLQSAQYWKPSTANYIFIGSASTGLHAEKEYALFLFTCEESTDSYLSAEEVDLWYREWLHETRVCQMFWDTEVSFFSEDTSLHKVAGTDEDRDFTMGLFLFECFTSPFPLSLSKDRDSIFLTHPMGRAIRWLKGLFGIKTDRESKDNSKPSTTWCHSDRDPKGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGNSRDTMCGGGQERLAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKLAAATLHSMQALIRAQATVRSKKSRGLMSTKNEAHGFQTQARRSMERFDDIKSEYIAPIHSRRLSSSFDATMNNANNSGDGSPKIVEVDTGRPKSRSRRSNTSISDFGDDPSFQTLPSPLPFTHLSIPNHRTFHDSEWGLTGEEYRFSTAQSTPRFTPNSCSCGSLIVAPTTPKSVCTENFFYEQYHNFPNYMANTQSFKAKLRSHSAPKQRPDPAPRKRLTLNEMMGSRSSLSGARMQRSCSQIQEAINFKNAVMSKLQKSTEFGRETPPTFPTRGGGDW 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00899 587 PANTHER IQ-DOMAIN 5-RELATED 150 539 - -
Spst3g00899 587 Pfam IQ calmodulin-binding motif 293 306 IPR000048 GO:0005515
Spst3g00899 587 Pfam IQ calmodulin-binding motif 269 287 IPR000048 GO:0005515
Spst3g00899 587 MobiDBLite consensus disorder prediction 329 349 - -
Spst3g00899 587 MobiDBLite consensus disorder prediction 403 419 - -
Spst3g00899 587 MobiDBLite consensus disorder prediction 376 419 - -
Spst3g00899 587 ProSiteProfiles IQ motif profile. 266 294 IPR000048 GO:0005515
Spst3g00899 587 MobiDBLite consensus disorder prediction 329 345 - -
Spst3g00899 587 SMART iq_5 288 309 IPR000048 GO:0005515
Spst3g00899 587 SMART iq_5 265 287 IPR000048 GO:0005515
Spst3g00899 587 Gene3D - 265 318 - -
Spst3g00899 587 ProSiteProfiles IQ motif profile. 290 317 IPR000048 GO:0005515
Spst3g00899 587 Pfam Protein of unknown function (DUF4005) 459 544 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00899 Spst-Chr3 12372941 12375957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00899 150 544 IQD Protein Family AT3G16490 52.764 1.70e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00899 - - gmx:100800892 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00899 3 12372941 12375957 Spst3g00899 3 12372941 12375957 ECH