Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00886 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCTAACACGAGGCAAGTCACTTTTTCTAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAATTATCCGTACTGTGTGGTGCAGAAATTGCCATTGTTGTCTTCTCAATTGGAAACAGACCTTACTCTTTTGGGCACCCTGGTGTTGATGTTGTTGCAGCCAAGTTTCTCGAACAGGAAATCGAATCCAATGATGTCGAACAAAACAACGTTGAAGTTGGTGACATGGATGTCTTGAATCAACAATTGCTGGATATTGAAGCCCAGATTCTCGTGGAAGAAAAGAAGGGCGTGGAGCATGACGAGAGACTAAGACAACACGAAGTGACACAACTCTCTAAGTATAAGGAATTACAAGATTCATATTTAGAATTCCAACGTAGGGTGAAAGATAATATTGATGCCATTGAGGTATCAAAATGTTTGATTCAACTTGCCCAAGAACCTGTACTCGAAATAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 531 0.3992 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSVLCGAEIAIVVFSIGNRPYSFGHPGVDVVAAKFLEQEIESNDVEQNNVEVGDMDVLNQQLLDIEAQILVEEKKGVEHDERLRQHEVTQLSKYKELQDSYLEFQRRVKDNIDAIEVSKCLIQLAQEPVLEITKQVKKRRKN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00886 176 Coils Coil 89 109 - -
Spst3g00886 176 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Spst3g00886 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00886 176 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Spst3g00886 176 PANTHER MADS BOX PROTEIN 3 134 - -
Spst3g00886 176 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00886 Spst-Chr3 12281818 12282348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00886 1 160 Type I MADS-box Gene Family AT2G34440 38.012 8.52e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00886 SRF-TF 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00886 - - gmx:100791127 264.618