Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00885 ATGGATAACAACAATGGCAGCCATAGAATTTCAGAGAACAAGGATGATATTGAGGTGGTGATGCCGCCATCGACGGTGTCAACGTTCAACAATTTCATAGACTTGGGCGTTTTTGATCTGGACGAGGCTCTAGCGGTGCTGGACGGAGAATCACGCCGTCTAGTCGCGCCCTACCAGACCTTTGTCTCCAACTTCCCCACTGTTACCGACGTGAGGAGGGACGACGTTTGCTCCGTTTGCATGGAGGGGTTCACCCGCGACAACAGGGATGGAGAAAACAAACGAGTCCCGTGCGGCCACGTGTTCCACTCAAAGTGCATCACCCTCTGGTTGGAGCACTGCAACTCTTGCCCCCTTTGCCGCTGCCATATCTCACTTTTCTAA 384 0.5286 MDNNNGSHRISENKDDIEVVMPPSTVSTFNNFIDLGVFDLDEALAVLDGESRRLVAPYQTFVSNFPTVTDVRRDDVCSVCMEGFTRDNRDGENKRVPCGHVFHSKCITLWLEHCNSCPLCRCHISLF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00885 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 126 IPR013083 -
Spst3g00885 127 SUPERFAMILY RING/U-box 70 125 - -
Spst3g00885 127 Pfam Ring finger domain 76 121 IPR001841 -
Spst3g00885 127 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 122 - -
Spst3g00885 127 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Spst3g00885 127 SMART ring_2 77 120 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00885 48 127 C3H Transcription Factor Family AT2G18670 40.244 4.57e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00885 K22378 - gmx:102669154 179.104