Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00884 ATGGGTCGTCGTAAGATTGAGATTACGGAAGTGAAGGACCCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTGGATGCTGTTGCAGACAAATTTCTTCAACAAGAGACTGCATCATCAGACGTTGTTGTCAGACCAAATCTTGTTGAAGGAACTAACTCATCTAATGCCGACAACGTAGATGCACTCAATCAACAGTTGTCTGGTGTTCAAACTCAAATACTCGAGGAACATAAGAAAACCGTTGAACTTGACAGGAAACAGAAGCAGCAAGAAGTCACCAAACTCACCCACAACAAACAGTTGCAACGTTCATACCTCAAGGTTCAGCGTAAGGTGGAGGATTATCTTGATGCAGTTGAAGTCTCAGAGTATTTGTTGCTCCTCGCAAAAGAACCTGTAATTGGAATAACAAAACATGTAACTACAAAAAGAACGAGAAAGAATTGA 561 0.4118 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDAVADKFLQQETASSDVVVRPNLVEGTNSSNADNVDALNQQLSGVQTQILEEHKKTVELDRKQKQQEVTKLTHNKQLQRSYLKVQRKVEDYLDAVEVSEYLLLLAKEPVIGITKHVTTKRTRKN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00884 186 PANTHER MADS BOX PROTEIN 3 143 - -
Spst3g00884 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Spst3g00884 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Spst3g00884 186 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Spst3g00884 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Spst3g00884 186 Coils Coil 136 156 - -
Spst3g00884 186 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00884 Spst-Chr3 12269297 12269857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00884 1 69 Type I MADS-box Gene Family AT3G66656 72.464 8.10e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00884 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00884 - - gmx:100790601 244.588