Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00883 ATGGGTCGTCGAAAGATTGATATTTCAGAGGTGAAGGATGCCAACAACAAGCAAGTTACATTTTCCAAGCGTCGCACAGGTTTGTTCAAAAAGGCAAACGAGTTGTCTATCATGTGCGATGCTGAAATTGCTGTTGTTATGTTCTCTCCTGGGGACAAGCCTTACTCTTTTGGACACCCTAGTGTTCATGTTGTTGCAGACAAATTTCTTCAACAAAACCATGCATCGAATGTTGAACCAGAAAGCAGCGCGTCTCATGAAGTTGGTGACATTCTAGGGCAACATCAACAATTATCGATTGTTAAATGCCATATAAGCGAGGAGCAGAAGAAGGCTACGGAACTTGACAAGAGAGAGAAAGAACAAGAAGCTGCACAACTCTCCCAATACAAAGAATTGCAGGTTTCACCAGCACTCCAGCGCATGGTGGAAGATTATGTTGATGCGGTCGAGGTTTCGGAGTCTATGTTGCTTCTGGCAGAAGAACCCGTTGATCTTTTGGTAACTATGACCAAAGAATAA 522 0.433 MGRRKIDISEVKDANNKQVTFSKRRTGLFKKANELSIMCDAEIAVVMFSPGDKPYSFGHPSVHVVADKFLQQNHASNVEPESSASHEVGDILGQHQQLSIVKCHISEEQKKATELDKREKEQEAAQLSQYKELQVSPALQRMVEDYVDAVEVSESMLLLAEEPVDLLVTMTKE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00883 173 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Spst3g00883 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Spst3g00883 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 PANTHER MADS BOX PROTEIN 3 131 - -
Spst3g00883 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Spst3g00883 173 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Spst3g00883 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00883 173 Coils Coil 103 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00883 Spst-Chr3 12264021 12268955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00883 1 69 Type I MADS-box Gene Family AT3G66656 63.768 1.80e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00883 SRF-TF 7.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00883 - - var:108346565 213.386