Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00882 ATGGGACACGGGGGCTCTAAAAGCATCGGAATTTCTGGCTGCTGTGGCGGTGAAAAGAGGAAAATATCAGAGAGAGTGGTGTTGCGTGTAAACTCAAAGGATAATATCCACAGCAGTGGTGAAGAAGAGGGAGAAGATAAGAACGTGATTGGTAGGAAGATGGAGAGCACACTGAAACCATTGCGAGATGGAGAGTCAGTATTGGACCTCAGCCCGAGATCCACTGTCAGCGGCGGCGTGGAGGATGTCTACGGCGAAGATCGCGCCACCGAGGACCAACTTGTTACCCCATGGACTTTCTCAGTTGCCAGTGGTTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCGCACTATTTGCGTGGGCTTCTGCCTCCGACAGTCAGTACTCAGCCACTTCAGGAGAAGAAACTGATGAACAGCATCAGGCAATATCAGGTTCCCTTGCAAAAGTACACTGCCATGATGGACCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTAATTGATAATGTTGAGGAATTACTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATAAGTTTGAAAGAGAAGGGTAAAATCCTTGAGGTTTTGAAAAACTGGCCTGAGAAGAGTATTCAAGTTATTGTTGTAACTGATGGTGAGCGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTTGTACACGGCGCTAGGAGGAGTTCGTCCTTCTGCTTGTTTGCCTGTCACTATCGACGTGGGGACAAATAATGAGAAATTACTGAATGATGAATTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAATATTATGCGCTTCTGCATGAGTTCATGACTGCCGTGAAGCAAAACTATGGAGAAAAAGTTCTTGTACAGTTTGAAGACTTCGCAAATCACAATGCTTTTGAGTTGCTTGCTAAATATGGTACAACTCATCTTGTTTTCAATGATGATATACAGGGGACTGCTTCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACCTTGCCTGAGCACACATTCCTCTTTCTTGGTGCTGGAGAAGCAGGAACCGGTATAGCAGAGTTAATTGCTCTTGAGATGTCAAAGCAGACTAAGGCACCTATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCCCGGAAGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAGCCTGTCAACAGTCTTCTAGAGGCCGTCAAGGTGATCAAGCCTACAGTTTTGATTGGATCATCAGGAGTGGGAAAAACTTTTACAAAGGAAGTAATTGAGGCAATGACTTCAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAATGTACTGCTGAAGAGGCTTATCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGAAAACTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTCATCTCAGGAGCAATTCGAGTTCACGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCTAAACAAGTGAGCGAGGAGAACTACAAAAATGGTTTGATTTACCCACCATTCTCTAATATCAGAAAAATCTCAGCCAATATAGCTGCAAATGTAGCTGCCAAGGCCTATGAACTAGGCTTGGCTACTCGTCTTCCTCGTCCTCAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTATAGAATATCATCAACTTCATTTGAGAAAAAGACGTCTGTTATCAGAGAAGAAATTGCAAAAATAAAGAAAGATGTAGCAGCAGGAGATGAAGAAAAAGGGAAAAGAGGAAGTATTGTACATCGTCCTGAAAAAATGTCAGATATTAGACAATATTACAAACAGATACTTCATCAAGACGTTTCCCAATTCAAAGCTTCATCAAAAGAGTAG 2139 0.4367 MGHGGSKSIGISGCCGGEKRKISERVVLRVNSKDNIHSSGEEEGEDKNVIGRKMESTLKPLRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSTQPLQEKKLMNSIRQYQVPLQKYTAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRATGQEYYALLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGKTFTKEVIEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKLYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYKNGLIYPPFSNIRKISANIAANVAAKAYELGLATRLPRPQNLVKYAESCMYTPVYRNYRISSTSFEKKTSVIREEIAKIKKDVAAGDEEKGKRGSIVHRPEKMSDIRQYYKQILHQDVSQFKASSKE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00882 712 ProSitePatterns Malic enzymes signature. 356 372 IPR015884 GO:0004471
Spst3g00882 712 Pfam Malic enzyme, N-terminal domain 169 349 IPR012301 GO:0004471
Spst3g00882 712 Pfam Malic enzyme, NAD binding domain 360 612 IPR012302 GO:0051287
Spst3g00882 712 FunFam Malic enzyme 358 644 - -
Spst3g00882 712 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 359 IPR046346 -
Spst3g00882 712 PANTHER MALIC ENZYME-RELATED 71 644 - -
Spst3g00882 712 Gene3D - 103 357 IPR037062 GO:0004471
Spst3g00882 712 Gene3D - 358 661 - -
Spst3g00882 712 SMART malic_2 169 350 IPR012301 GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 175 199 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 271 293 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 331 349 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 235 264 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 356 372 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 387 403 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 PRINTS Malic enzyme signature 490 506 IPR001891 GO:0004470|GO:0004471
Spst3g00882 712 SMART Malic_M_2 360 613 IPR012302 GO:0051287
Spst3g00882 712 CDD NAD_bind_1_malic_enz 360 638 - -
Spst3g00882 712 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 360 652 IPR036291 -
Spst3g00882 712 FunFam Malic enzyme 103 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00882 Spst-Chr3 12255756 12261269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00882 K00029 - gmx:100782096 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00882 3 12255756 12261269 Spst4g02318 4 63906552 63915374 ECH
Spst3g00882 3 12255756 12261269 Spst5g00214 5 1847116 1852583 ECH
Spst3g00882 3 12255756 12261269 Spst9g00988 9 8788240 8793202 ECH
Spst3g00882 3 12255756 12261269 Spst3g00882 3 12255756 12261269 ECH
Spst3g00882 3 12255756 12261269 Spst4g02622 4 66177624 66185792 PCT