Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00874 ATGGCTGAGCTACCTAGCTCAGACCCACCAAGCTCCGAAGCATCATCATCTGCTTCCACTCGCAAGCACTCGTCTTTGGAGGCCCATTTGACCGGCCCGGACCAGAAAAAGCCCAAGCAGGCCCGAGATAGCAGCAGCAAGCACCCCGTCTACAGAGGGGTCCGAATGCGAGCCTGGGGGAAGTGGGTATCGGAAATCCGCGAGCCCAGGAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACAGCCGATATGGCGGCGCGTGCCCACGACGTGGCGGCGCTCGCCATCAAAGGAAACTCCGCCATTCTCAACTTTCCCGACCTGGCCGGCTCCCTGCCCCGGCCCAACTCCAACTCGCCGCGGGATGTTCAGGCGGCGGCGGCCAAGGCGGCGGCCATGGAGGTGATGGATCTGCCGACGACTCCGTCGTCGACACTGTCGCAGTCGTCGTCTTCTTCTTCGTTAGCGATTAGCTCCTCCTCCGGGGAGGCGTCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGTCTGGGAAGGGGTTTGGAAATAGCGGAGGCGAGTGAGGAGGTGGTGTTTCTGGAGCCGGTAGACGGGTGGCTGTATTCTCAGCCATGGTGTGGCGGCATTTATGATGAGAGGGAGTGTGGGGGGTATTTTATTGCGGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGCTTTGAGGGTTCATTGTGGCAGCATTAA 744 0.6008 MAELPSSDPPSSEASSSASTRKHSSLEAHLTGPDQKKPKQARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATADMAARAHDVAALAIKGNSAILNFPDLAGSLPRPNSNSPRDVQAAAAKAAAMEVMDLPTTPSSTLSQSSSSSSLAISSSSGEASTPEELGEIVELPSLGRGLEIAEASEEVVFLEPVDGWLYSQPWCGGIYDERECGGYFIADEISMQESESMILCGFEGSLWQH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00874 247 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Spst3g00874 247 MobiDBLite consensus disorder prediction 8 26 - -
Spst3g00874 247 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Spst3g00874 247 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 MobiDBLite consensus disorder prediction 140 171 - -
Spst3g00874 247 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Spst3g00874 247 MobiDBLite consensus disorder prediction 27 50 - -
Spst3g00874 247 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 MobiDBLite consensus disorder prediction 1 50 - -
Spst3g00874 247 MobiDBLite consensus disorder prediction 140 167 - -
Spst3g00874 247 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Spst3g00874 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00874 Spst-Chr3 12209883 12210626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00874 35 208 AP2-EREBP Transcription Factor Family AT5G11590 61.236 5.62e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst3g00874 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00874 K09286 - gmx:100778201 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00874 3 12209883 12210626 Spst3g00874 3 12209883 12210626 ECH
Spst3g00874 3 12209883 12210626 Spst4g02632 4 66302077 66302736 PCT