Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00860 ATGTCTGCGGCATTGGAAGAGGTTCCTTCAATGAAAGGTGGGTGTGAAGAAGGGTTGAACCTGAAGGCCACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGCTGCCTTGTTCTCTCCAAGGGGAACTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAGCAGACTGCACCAACCACACAACTGTTTTGGGTGCTTCTGTTCTCAAGGAAACAGTTCCACACTCTCCAAAACCTTTGCATGAGAAGAAGCCTCAGATTTCTGCTCCAGCTGCTAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGATGCTGAGGCAGAAGCTAAGTCTGAATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGAGTTTCTTCTAGTCCAGAAAATTTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATACGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCTGTGGAAAAGTGCAAAAGTCGCAACTAG 876 0.4669 MSAALEEVPSMKGGCEEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGGSGNWNGGSEVGLGKDAALFSPRGTVSAAKSLTLTAADCTNHTTVLGASVLKETVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSSPENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00860 291 Gene3D - 164 285 - -
Spst3g00860 291 SUPERFAMILY CAD & PB1 domains 167 272 - -
Spst3g00860 291 ProSiteProfiles PB1 domain profile. 170 273 IPR000270 GO:0005515
Spst3g00860 291 FunFam Auxin-responsive protein 165 283 - -
Spst3g00860 291 Pfam AUX/IAA family 24 282 IPR033389 -
Spst3g00860 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 278 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00860 Spst-Chr3 12062531 12064842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00860 173 281 B3 DNA Binding Superfamily AT4G23980 30.275 8.70e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst3g00860 AUX_IAA 4e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00860 K14484 - gmx:100778529 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00860 3 12062531 12064842 Spst4g02651 4 66509562 66512105 PCT