Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00858 ATGACCACCGTAACTGTCACCACTCGATCTCAGATCCTCCGCCACACTGCCGCATTCACCTCCTCCGTCCTATCACAATCTGAACTACGGCGCTGCCTCATCGCCACTCTCCTCCGCAACACTCCAATCTCCGACCAAAAACACCTCAACCTCGCAGCAGACACTCTAGAAAGCGCGATCGCCTTCTCCAGCCCTGCCCTCCGCTCCTCCTCTCTCTCTCTCGCGGAGAAGCTACTCATCCCTCTCCCCAACTTCGCCCTTTCCTCGCTCCTTCTCTCTCTCATCCACGCCCTCCGTGACCGCCCAACCGAATCCACCATCAGCCTCCTTCGAATCTTCCACTCCGACAACAACAACGAGAACGATAGCGCTTGCCTCGCTAGATCCGAAATTGCTCCCGCGCTCTACGAGCGCCTCTTCACTCCACACCTCTTCCCTGTCTTCCGCCGGTTCGATGAACAGAGGACGCATATTCTCTCCTCCACTTCCTCAACCTCGAGTGAAAACGATTATTCAGTTTCTGAGGAGTTCTCCGTGGTGCTGCCTTGCGCCAAGGTGCTGTCAAAGATGAGCGAGGAGCAGGCCGCGAAGCTCCGGGCGGTGGAGAGAGAGTACGAAGAGGTTCTCGACGAAAACTGTAGGGTTCTAGCAGAGTATTTCGAAGAGGTTTTGGTCAACAAGAACGGTGACGAGGCGATTAGTCCACCGTCGTTGATACTGAAGAGCGCCGCTGAAGGTGGCGGCAGGGAGAATAGAACGGAGGAGATGACGAAAATGAGTGTGTTGGAGAACGGACGGCATAATCCAATATGGTCTGAAAGGGAAGCATCTATCGAATTTTTGAGCCCCAGTTCCACCAGCAGATCCTCCCAGGCGCCATTTTATCCTCAAAGAATCTTTTCCAGAATCCTCAAACCCAAAAATCCTTCAAAAACTTCGACAAAGCCAGTCTATTTAAACACAACCGATGACGCTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAACGACAAAACTATTGCATTGTTGGAACCTCGACAAAGCCAGCTTCAAGAACAAATCCAAACCAACTTCAAACAACCCAGAGGTTCGCCAGATTATCCTATGGCAGACTTCGACAACCAGCTGAATGGAATTGGGAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACCCAGCTGCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCAATTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACTGAGGGAGTTGTGCATTCAACCATGGCTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGATGTGCAATCAATAATCTGTACATGTCAGAGGTTCTCCAGGAATCGGAAATGGCCGTGCTTCAAGTTGAGAAGTTCTGGAGAGGAGTGAATCTAGGAGTGAATATCCATAGAATGTTATCAAAACCTGAGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTATGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGGTCTAGGGACAATGCTGTCATCAAGACTCTCACACGTGTGAACACTGATGTGGAATGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCGGTTGTGTTGTTGTATCTCCTTAACCCTCCCATTACGATTCTTGCGGAGATGGCCATAGTGGAATCTCTCATAATGGTTTTCAATACGGAAGAGGAAGAATTGGTTAAGATGTGTTTGAAGCCCAAAACAACTGCATTGCTTTTACTTGCAAGGATTATTGGAAGCAGTGAAGAGATTATTGCATCTTCGGTCGTCAATACCCTTTTGTCTGAAAAAGCAATTGGAACTATTGTCAGCAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGAGCAACATTGCGGAAAAGGCAGAGTTGTCACCTCTTCTGGAAACCTTAGTCGGTGCAAATGATGGAGAGCGTTTTAAGATTATTAAGTTTTTCTCTGAGTTGGTCAAATTAAATAGGAGGACATTCACTGAACAAATTCTCCATATTTTAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGACTGCCCTTCACGATCAATGTCCAGTGATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCTATGGATACTCTTATTTCATGCCTGAGAAACAAAGATTTCCCCGTTACACAATTAGCAGCTGCTGATATAATCATGTCACTGCAAGGGAGCTTTGACTTATCCGGAAACCCTCTAACCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTACAGGTGGATCAGATAAACAACTCCAGTCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGCCAGCCATGAATTTGGCACTCTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTAAGATCAGCATGCTTTACATCAGCTACATGGCTCACATACATGTTGACCATTCTACCGGATACAGGGATACAAGTAGCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAGGGATGTAGAAGACAGAATCCTTTCTGTGGTTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAAAGGGTTGAGAGAGCTGAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAAGCTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATAAAGTGATTATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGCTGTCTGTCATTTTCTTTAAGGATAAATTTTTTTCGGGCCATACAGATGGCACAATTAAGGTCTGGACATTAAAGAGTAACTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAGGCAGTGACCAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGATCGAACTGCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGCACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCACTGAATGGAGAATCAAAGTTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCCCATGTTCATGGGAAATTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAATACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAATCCTATTCATGCACTACAAATTCATGGTGAACTTCTATACGCCGCTGGCTCTTCCATGGATGGATCTTCTATAAAGATATGGAACAATTCCGATTACAGTATGGTTGGGTCACTGCAAACTGGATCTGAAGTGCGGACTATGGCAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGTACCGTGGAAATTTGGGATAAGAAGAAACGCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAAGGTCAATTGCATGACTCTAGACAGCAATGGAGAAGTTTTGGTAATTGGAACTTCGGATGGACAAATTCAGGTGACTTTTTACCTTATTCAATTATTAAACGATGGACGTTTTAGTCTGGCTCAACTTTTTAGACTTCAAAGTTTTGCATTTTATTATGCCATCTATGCACTTAAATCTCGGGTAATTGCAGGCTTGGGAGATGAATTAGAAGAGGATGCTCAGTGTACAGCTGGTGCAGGAAGACTTACATGA 4170 0.4444 MTTVTVTTRSQILRHTAAFTSSVLSQSELRRCLIATLLRNTPISDQKHLNLAADTLESAIAFSSPALRSSSLSLAEKLLIPLPNFALSSLLLSLIHALRDRPTESTISLLRIFHSDNNNENDSACLARSEIAPALYERLFTPHLFPVFRRFDEQRTHILSSTSSTSSENDYSVSEEFSVVLPCAKVLSKMSEEQAAKLRAVEREYEEVLDENCRVLAEYFEEVLVNKNGDEAISPPSLILKSAAEGGGRENRTEEMTKMSVLENGRHNPIWSEREASIEFLSPSSTSRSSQAPFYPQRIFSRILKPKNPSKTSTKPVYLNTTDDADFSLDESLLSSSDSEAENEENDKTIALLEPRQSQLQEQIQTNFKQPRGSPDYPMADFDNQLNGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPQLVQPPYESPYEDTEGVVHSTMASTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQVEKFWRGVNLGVNIHRMLSKPEIINGFMEILFNSMEPQVLQAAVFLLAEMGSRDNAVIKTLTRVNTDVECIMALFKNGLTEAVVLLYLLNPPITILAEMAIVESLIMVFNTEEEELVKMCLKPKTTALLLLARIIGSSEEIIASSVVNTLLSEKAIGTIVSSLGADLAKERIAAVEILLRCMEEDGTCRSNIAEKAELSPLLETLVGANDGERFKIIKFFSELVKLNRRTFTEQILHILKEEGPFSTMHTLLIYLQTALHDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNKDFPVTQLAAADIIMSLQGSFDLSGNPLTREVLLKRAGIDKSSRSLVQVDQINNSSPEIDITPEEEKAADDWERRIASVLASHEFGTLFEALADGMKSRNPELRSACFTSATWLTYMLTILPDTGIQVAARACLLKQFIAKLNSARDVEDRILSVVALNSFLHFPEGLGDLTSYTKDILKGLRELKRSCPLASKMLKALVEENESKADIWIHKVIIKEDCSENGEVLSVIFFKDKFFSGHTDGTIKVWTLKSNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTAKVWSIGKAAIHCAQVYDMKDQIHNLVVTNSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHALQIHGELLYAAGSSMDGSSIKIWNNSDYSMVGSLQTGSEVRTMAVSSELIYLGCKGGTVEIWDKKKRSKVDTLQMGTNCKVNCMTLDSNGEVLVIGTSDGQIQVTFYLIQLLNDGRFSLAQLFRLQSFAFYYAIYALKSRVIAGLGDELEEDAQCTAGAGRLT 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00858 1389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 471 IPR013083 -
Spst3g00858 1389 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Spst3g00858 1389 Coils Coil 696 716 - -
Spst3g00858 1389 SUPERFAMILY ARM repeat 555 993 IPR016024 -
Spst3g00858 1389 CDD RING-Ubox_PUB 395 447 IPR045210 -
Spst3g00858 1389 SMART WD40_4 1253 1289 IPR001680 GO:0005515
Spst3g00858 1389 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Spst3g00858 1389 SMART WD40_4 1211 1250 IPR001680 GO:0005515
Spst3g00858 1389 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Spst3g00858 1389 SMART WD40_4 1292 1332 IPR001680 GO:0005515
Spst3g00858 1389 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Spst3g00858 1389 Coils Coil 191 211 - -
Spst3g00858 1389 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1330 - -
Spst3g00858 1389 Gene3D - 1150 1332 IPR015943 GO:0005515
Spst3g00858 1389 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Spst3g00858 1389 SUPERFAMILY WD40 repeat-like 1062 1330 IPR036322 GO:0005515
Spst3g00858 1389 Gene3D - 539 1028 IPR011989 -
Spst3g00858 1389 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Spst3g00858 1389 SUPERFAMILY RING/U-box 393 469 - -
Spst3g00858 1389 Gene3D - 1029 1149 IPR015943 GO:0005515
Spst3g00858 1389 Pfam WD domain, G-beta repeat 1088 1123 IPR001680 GO:0005515
Spst3g00858 1389 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Spst3g00858 1389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00858 Spst-Chr3 12014234 12021566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00858 395 461 U-box Gene Family AT1G23030 53.731 4.32e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00858 - - vun:114176884 2224.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00858 3 12014234 12021566 Spst3g00858 3 12014234 12021566 ECH