Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00855 ATGGAGATGGACCCTCCACCAAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAATACGAGGTAATGGAACGGGTAGGGTCGGGAGCATACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGACGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAGTCCGCGTTCAGAGAAATCGACGCGTTGCAGCTCCTCCAGGGGTCCCCAAACGTCGTCGTTTTGCATGAGTACTTCTGGCGCGATGACGAGGATGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCCACTGTCATTGCAGACGCCGCCAAGGCCAACCAGCCCCTCCCCGCTGGCCAGCTCAAGCGCTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCACCGCAACATGGTCCTCCACCGTGATTTGAAACCCTCTAATCTCTTAATTTCCGAAAACGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTCACGGAGCCTGGATTTGATGCTTCTGATAATCATGAAGAATACTCTACAGTTTTAGATGACATTGATAATGAGGATACTAGAACAAATTCTCACGATGGAAATGCAACTTGCACCACAAGTGACATATATAGGGAAGAGGAAGAGGAAGACGCAGAACTTGGTTGTTTCACATCATGTGTTGGGACTCGATGGTTTAGGGCTCCTGAGTTGCTTTACGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTCGCGGAGCTTTTAACTCTGCAACCTTTGTTTGCCGGAGCTGCTGATATTGACCAGCTCAGTAAAATCATTGGTGTTTTGGGTAACCTTGATGAGAGCGCTTGGGTTGGGTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCTAATAGGTCTACTGATGAAGTGGCTATGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCGATGGAGTTGCTTCATGATAAGTACTTTAAAGAAGAGCCTCTTCCTGTTCCGTTATCTGAGCTGCAAGTTCCTCTCAACAGAAAAGTGCAAGACGAGAATTCCCCTGGTGAGTGGGGTAATTTCCATGAAATGGACTCTGATTCTGATTTTGATGAATTTGGCCCTCTCAATATCACAAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1242 0.4944 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGSPNVVVLHEYFWRDDEDAVLVLEFLRTDLATVIADAAKANQPLPAGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDASDNHEEYSTVLDDIDNEDTRTNSHDGNATCTTSDIYREEEEEDAELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFAGAADIDQLSKIIGVLGNLDESAWVGCSKLPDYGIISFSKVENPAGIEACLPNRSTDEVAMVKRLVCYDPAKRATAMELLHDKYFKEEPLPVPLSELQVPLNRKVQDENSPGEWGNFHEMDSDSDFDEFGPLNITRTGTGFSIQFP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00855 413 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Spst3g00855 413 Pfam Protein kinase domain 22 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00855 413 Pfam Protein kinase domain 218 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00855 413 Gene3D Transferase(Phosphotransferase) domain 1 109 355 - -
Spst3g00855 413 SUPERFAMILY Protein kinase-like (PK-like) 15 358 IPR011009 -
Spst3g00855 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Spst3g00855 413 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Spst3g00855 413 PANTHER CELL DIVISION PROTEIN KINASE 21 358 - -
Spst3g00855 413 ProSiteProfiles Protein kinase domain profile. 22 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00855 413 SMART serkin_6 22 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00855 413 FunFam Cyclin-dependent kinase F-1 13 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00855 Spst-Chr3 11998280 12000144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00855 6 413 Core Cell Cycle Gene Families AT4G28980 56.421 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Spst3g00855 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00855 - - vum:124837370 740.725